Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16i21f
         (743 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK123615-1|BAC85662.1|  142|Homo sapiens protein ( Homo sapiens ...    32   1.9  
AY045575-1|AAK92217.1| 4624|Homo sapiens axonemal dynein heavy c...    30   7.6  

>AK123615-1|BAC85662.1|  142|Homo sapiens protein ( Homo sapiens
           cDNA FLJ41621 fis, clone CTONG3008951. ).
          Length = 142

 Score = 32.3 bits (70), Expect = 1.9
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = -2

Query: 214 GGRTTHNPGTVEVSGFLGASKTLGPGDTDLDVVVEFDGLFC 92
           GGRT    GT+   G   A K L PG T+L + V F  +FC
Sbjct: 86  GGRTLWPHGTLRTQGRASAGKEL-PGLTELHLTVLFLAIFC 125


>AY045575-1|AAK92217.1| 4624|Homo sapiens axonemal dynein heavy chain
            DNAH5 protein.
          Length = 4624

 Score = 30.3 bits (65), Expect = 7.6
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -2

Query: 175  SGFLGASKTLGPGDTDLDVVVEFDGLFCHDHGR-QRHQYCCEDLHDYYQLQVPS 17
            +G L      GPGDT  D  V  DG + H + R Q + Y  +   +Y  + VP+
Sbjct: 2513 TGTLELPPPAGPGDTAFDYYVAPDGTWTHWNTRTQEYLYPSDTTPEYGSILVPN 2566


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,981,049
Number of Sequences: 237096
Number of extensions: 1862025
Number of successful extensions: 4930
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4920
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8903143626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)