Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16i21f
         (743 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.3  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    23   4.0  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   7.0  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 5/13 (38%), Positives = 11/13 (84%)
 Frame = +1

Query: 643 DFSYFSHIVGWTC 681
           ++ ++SH++GW C
Sbjct: 523 EYPWWSHVLGWLC 535


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 5/13 (38%), Positives = 11/13 (84%)
 Frame = +1

Query: 643 DFSYFSHIVGWTC 681
           ++ ++SH++GW C
Sbjct: 576 EYPWWSHVLGWLC 588


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -3

Query: 315 LYFDQNFNESLKSVGLG 265
           LY  +NF++ +K++G+G
Sbjct: 11  LYSSENFDDFMKALGVG 27


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 187 TVEVSGFLGASKTLGPGDTDLDVVV 113
           T +V G +GA   +G  D D D ++
Sbjct: 108 TGDVHGVIGAGHWIGDHDVDKDELI 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,768
Number of Sequences: 438
Number of extensions: 3531
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)