Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16i20r
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.8  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   4.9  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   4.9  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   6.5  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   8.5  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -2

Query: 656 RASLASLNYFFNTVHIVLNYILYSVFVFNKHDISQLY 546
           +  + +L   FNT+HI+ +     +F  N  D  +LY
Sbjct: 3   KMQILTLGVLFNTLHIIYSVAGLKIFEANP-DTKRLY 38


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 742 KIEPTYFHYDVI 707
           K++PTYFH+  I
Sbjct: 34  KLQPTYFHHTYI 45


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 742 KIEPTYFHYDVI 707
           K++PTYFH+  I
Sbjct: 34  KLQPTYFHHTYI 45


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 755 GPFLNCFYTYWFIYL*CPFI 814
           G F+ C+  ++ +YL  PF+
Sbjct: 313 GGFVACWLPFFILYLATPFV 332


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 739 IEPTYFHYDVIASVI 695
           IEP YFH  V+ S++
Sbjct: 456 IEPIYFHSIVLGSLL 470


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 246,572
Number of Sequences: 438
Number of extensions: 6083
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)