Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16i20f
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    28   1.3  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    28   1.3  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    26   5.1  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.1  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    26   5.1  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   6.7  

>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 550 PASPTYQNTSSFHSEKMTPH 609
           PA+P+ QN+ S H  +M PH
Sbjct: 460 PAAPSIQNSLSVHESEMPPH 479


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +1

Query: 550  PASPTYQNTSSFHSEKMTPHKYTSTVQSNYSTHTPGYNVGQSPGYGRT 693
            P+SP+Y  TS  +S   T   Y+ T  S YS  +P Y+   SP Y  T
Sbjct: 1573 PSSPSYSPTSPSYSP--TSPSYSPTSPS-YSPTSPSYS-ATSPSYSPT 1616


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 601 TPHKYTSTVQSNYSTHTPGYNVG 669
           +P   T +  S+YST TP +++G
Sbjct: 535 SPSSSTKSASSSYSTTTPAFSIG 557


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = +1

Query: 514 NGSRNISSDYA-KPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSTHTPGYNVGQ 672
           +GS N  S     PA PT Q  +S+     +    +    SNY+T  P Y   Q
Sbjct: 61  SGSGNAYSQAPYPPARPTSQRPNSWQPGNASTMYASPPPSSNYNTAKPPYQTSQ 114


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = +1

Query: 511 INGSRNISSDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSTHTPGYNVGQS 675
           I+   N    Y KP +P Y+ TS + ++ +      + ++   +T TP    G S
Sbjct: 480 IDDKWNRKVQYIKPVAPPYRQTSCYITDTIQHLDINNYIEILSTTSTPDVPSGTS 534


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 16/44 (36%), Positives = 27/44 (61%)
 Frame = +1

Query: 514 NGSRNISSDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNYST 645
           + S  ISS  + P+S ++ +T+S  S K +   ++STV S+ ST
Sbjct: 338 SSSSTISSSSSSPSSSSFSSTTS--SSKSSS-SFSSTVSSSSST 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,769,498
Number of Sequences: 5004
Number of extensions: 52675
Number of successful extensions: 166
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)