Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16i20f
         (758 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0019 - 15134494-15135863,15135966-15136083,15136226-151362...    30   2.3  
04_01_0385 - 5095410-5095445,5095595-5095796,5095905-5095979,509...    29   3.0  
07_03_0147 - 14437982-14438390,14438521-14438576                       29   4.0  
11_06_0542 + 24777453-24777632,24777654-24778478,24778576-247793...    29   5.3  
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287...    29   5.3  
05_03_0491 + 14682895-14683365,14684127-14684656,14684739-14685213     28   7.0  
07_01_1045 + 9131301-9131483,9131652-9131717,9132433-9132513,913...    28   9.3  

>01_04_0019 -
           15134494-15135863,15135966-15136083,15136226-15136278,
           15136293-15137271,15138980-15139054
          Length = 864

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 393 RRSHQFPGQNWVSSRQRHFTGPS-QLVRQP 479
           RR HQF  QN VS R  H  GPS  +VR P
Sbjct: 571 RRKHQFDVQNKVSLRWIHALGPSLGIVRVP 600


>04_01_0385 -
           5095410-5095445,5095595-5095796,5095905-5095979,
           5096460-5096484,5097032-5097137
          Length = 147

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 718 ARSGSLD-HRSCRSLAIVPRCNRACGYCSCFGRYSYICAES 599
           ARS S D HRSCR   +   C +   YC CF  Y Y C+++
Sbjct: 48  ARSMSNDQHRSCR--CVKSNCVKL--YCPCFSAYGY-CSQN 83


>07_03_0147 - 14437982-14438390,14438521-14438576
          Length = 154

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
 Frame = +3

Query: 573 HKLIPLREDDSAQIYEYRPKQLQYPHARLQRGTIARLRQDRWSREPERAGHP--TRRLEQ 746
           H+    REDD      YR         R   G  +R+ + RW RE  R G P    R EQ
Sbjct: 30  HRPFTAREDDELLRLHYRLGDRWKEIGRAVYGRTSRVMKHRW-RELRRGGFPAAATRKEQ 88

Query: 747 CP 752
            P
Sbjct: 89  AP 90


>11_06_0542 +
           24777453-24777632,24777654-24778478,24778576-24779319,
           24779422-24780354,24780456-24780938,24780969-24781082,
           24781240-24781636,24781732-24782024,24782392-24782802
          Length = 1459

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 554 LRQLTKTQAHSTQRR*LRTNIRVPSKATTVPTRPVTTWDNRQATAGP 694
           LR+L K +AH   +R LR ++ VP K ++       +W  +   A P
Sbjct: 119 LREL-KDRAHDVGQRRLRYDVEVPGKPSSKAAGGAASWSVQSEEASP 164


>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
            2879715-2879973,2880060-2880346,2880423-2880758,
            2880862-2881003,2881077-2881297,2881379-2881540,
            2881617-2881775,2881860-2882159,2882834-2883097,
            2883133-2883243,2883902-2883988
          Length = 1871

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 19/51 (37%), Positives = 24/51 (47%)
 Frame = +1

Query: 532  SSDYAKPASPTYQNTSSFHSEKMTPHKYTSTVQSNYSTHTPGYNVGQSPGY 684
            +S    P SP Y  TSS +S     +  TS   S YS  +P Y+   SP Y
Sbjct: 1672 TSPVYSPTSPVYNPTSSAYSPTSPSYNPTSPSYS-YSPTSPSYS-PTSPSY 1720


>05_03_0491 + 14682895-14683365,14684127-14684656,14684739-14685213
          Length = 491

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -2

Query: 394 RATWSCRWGC 365
           R  WSCRWGC
Sbjct: 457 RCAWSCRWGC 466


>07_01_1045 +
           9131301-9131483,9131652-9131717,9132433-9132513,
           9133414-9133482,9133581-9133643,9133933-9133941,
           9134259-9134341,9134415-9134517
          Length = 218

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +3

Query: 189 ITKRTAFRLVEDG*DNVWQSATRHLLSIPLRYEGERNIAWLCFACRPPELY 341
           I K T+F + EDG D + + A  +  S P  Y+  + +A    A   PE Y
Sbjct: 101 IAKLTSFYM-EDGPDYIAEEAKLYKYSFPYLYDESQEVAKAFRAVCTPEFY 150


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,846,093
Number of Sequences: 37544
Number of extensions: 380264
Number of successful extensions: 1164
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)