Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16i10f
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    29   0.91 
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    28   1.2  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    28   1.2  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    28   1.6  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    27   2.1  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    27   2.8  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   3.7  
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    27   3.7  

>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 18/75 (24%), Positives = 31/75 (41%)
 Frame = +1

Query: 490 KLTGSVTDLITYRAPANTSWESGASALEHALKLESDVTNSIREVIKTCESSFNDYHLVDY 669
           +L  S  +L ++      S  S  S L+ +  +E +    +  V++ CE  F  +    Y
Sbjct: 144 ELNFSTEELSSFDTTLLNSDTSKLSGLDDSSFMEEEFVWQVDNVLQECEKKFTPHSKGSY 203

Query: 670 LSGEFLDEQYKGQRD 714
           L      E  KG+ D
Sbjct: 204 LKENLKSELRKGRLD 218


>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 503 P*PTSSRTGPPQTRRGRAAHQPSSTPSSWRV 595
           P PT+     P+  RG+A ++PS    +W++
Sbjct: 337 PVPTNVVKANPRVNRGKAGYEPSENIINWKI 367


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +1

Query: 571 EHALKLESDVTNSIREVIKTCESSFNDYHLV--DYLSGEFLDEQYKGQRDL 717
           E   +L   V N I  ++KTC +S ND  ++  DY+S +    + K Q+DL
Sbjct: 749 ESQKELMYGVRNDIDALVKTCTTSLNDADIILSDYISDQKSKFESK-QQDL 798


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +1

Query: 562 SALEHALKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQY 699
           S L+   K +S+  N IR +I   E++    H    +S  FL+E Y
Sbjct: 669 SQLKKVYKPKSEAINPIRTIISNWENNSYTNHSSYQISNLFLEEDY 714


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +1

Query: 637 SSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTL 738
           S   DYHL++ L      E YK QR   GK   L
Sbjct: 31  SHLTDYHLMEKLGEGTFGEVYKSQRRKDGKVYAL 64


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 600 HQQHPGGHQDLREQLQRLPPGRLFVRGIPRRTVQGPT 710
           H QH   H+  +E L+   PG +     P  + Q PT
Sbjct: 196 HHQHIQAHEMAQESLETRNPGNISSSSAPLASDQSPT 232


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 351 NPVLSHG-GLLLDRYGEPPRLREAILRC 431
           +P L +G G+L DRYG      EA ++C
Sbjct: 437 DPKLWYGIGILYDRYGSHEHAEEAFMQC 464


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 583 KLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQ 696
           ++E DV  S++        +  DYH    LSGE LD +
Sbjct: 146 EVEKDVQGSLKSKDGFRSVTLKDYHRQKLLSGEILDAE 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,591,393
Number of Sequences: 5004
Number of extensions: 49411
Number of successful extensions: 143
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)