Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16h22f
(801 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622 31 0.81
12_01_0833 - 7730761-7731030,7731171-7731425,7731565-7731736,773... 30 1.9
08_02_0487 + 17691963-17692048,17693337-17693448,17694128-176943... 30 2.5
05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718 30 2.5
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 29 3.3
01_06_1353 + 36533795-36533827,36533904-36533993,36535595-365356... 29 4.3
11_01_0090 + 679162-679472,679579-679588 29 5.7
06_03_0914 + 25920277-25920405,25920783-25920810,25920890-259209... 29 5.7
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 29 5.7
12_01_0421 - 3321590-3323692 28 9.9
10_02_0085 - 5093036-5094285,5094737-5095255,5098698-5099373 28 9.9
03_05_1010 - 29653973-29654269 28 9.9
02_05_0266 + 27280592-27281668 28 9.9
>02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622
Length = 501
Score = 31.5 bits (68), Expect = 0.81
Identities = 33/114 (28%), Positives = 46/114 (40%), Gaps = 5/114 (4%)
Frame = +3
Query: 114 LPVTSLVLPVLIRPVLTQLEKYDLAASQTLRAALTKAEAAVPGLNYDLVAGIMRRADIPV 293
LP V P L P +E+ A AA + +PGL + V M RA V
Sbjct: 18 LPSLLPVSPSLSTPRARDIEQPSPRAPSG--AAEFDLVSRMPGLRHPSVLSAMTRAVADV 75
Query: 294 NMNESLLRLQGSLTDSECTD-----LRLNRTEEAFQELNKKSAALKKILSRIPD 440
+ LRL G D E D LR + EEA +E + A + + R+ +
Sbjct: 76 SSARDALRLLGPRPDHELVDSARAFLRSHAAEEAEEEEEDEKVAKSREVVRLDE 129
>12_01_0833 -
7730761-7731030,7731171-7731425,7731565-7731736,
7731873-7732106,7732362-7732495,7734116-7734199,
7735086-7735376,7735566-7735898,7736351-7736424,
7736558-7736653,7736876-7737029,7737118-7737221,
7737325-7737485,7737774-7738087,7738950-7739231,
7739909-7740210,7740513-7740713,7740924-7741014,
7741424-7741500,7741595-7741754,7742026-7742110,
7742194-7742288
Length = 1322
Score = 30.3 bits (65), Expect = 1.9
Identities = 20/50 (40%), Positives = 26/50 (52%)
Frame = +3
Query: 429 RIPDEITDRKTFLETIKEIASAIKKLLDAVNEVSTYTPGPGKQVLEQRKR 578
R+P EI D KT E + E+ I+ LD + + TPG EQRKR
Sbjct: 832 RLPAEI-DTKTRKEFVDEVLEIIE--LDEIRDALVGTPGVNGLSREQRKR 878
>08_02_0487 +
17691963-17692048,17693337-17693448,17694128-17694314,
17694848-17695347,17695480-17695593,17696065-17696220,
17696306-17696395
Length = 414
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 184 WLPLRHYEQLSPKQRLQYLVLIMI-WWQES*GEQIFLLI 297
+LPLR Y SP R +L L ++ WW E Q+ L+
Sbjct: 363 FLPLRQYVNHSPVLRKVFLKLSLVDWWSELTTNQLMALV 401
>05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718
Length = 1412
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Frame = +3
Query: 375 EAFQELNKKSAALKKIL--SRIPDEITDRKTFLETIKEIASAIKKLLD 512
EA E+ ++ A++KI+ + I +EIT+ +T E E+A+AI K ++
Sbjct: 1020 EATAEVLEECTAIEKIVEDNTIAEEITEGETVAEVHVEVATAIDKAVE 1067
>04_04_1144 +
31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 29.5 bits (63), Expect = 3.3
Identities = 24/114 (21%), Positives = 50/114 (43%)
Frame = +3
Query: 303 ESLLRLQGSLTDSECTDLRLNRTEEAFQELNKKSAALKKILSRIPDEITDRKTFLETIKE 482
ESLL S +D+E R E N+K ++ L + +++ LE +
Sbjct: 586 ESLLHT--SKSDAEVAHTRTQDLENELNTANEKFKEVEADLEQYRSKVSQLSDELEAYQT 643
Query: 483 IASAIKKLLDAVNEVSTYTPGPGKQVLEQRKREFVKYSKRFSTTLKEYFKEGQA 644
A++++ ++++ +E Q+ E++K+ + +EY KE Q+
Sbjct: 644 KAASLEAVMESASEKEKELVESLGQITEEKKK-LELLVLEYEEKTEEYLKEKQS 696
>01_06_1353 +
36533795-36533827,36533904-36533993,36535595-36535681,
36535775-36535843,36536472-36536552,36536641-36536712,
36536814-36536874,36536960-36537062,36537223-36537318,
36537394-36537440,36538052-36538299
Length = 328
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -2
Query: 491 RGYFLDSLKKSLPISYLIWNATQYLFQSSRFLIKLL 384
+GY +S+ + IS+L+W+ +++ S RF LL
Sbjct: 76 KGYVSESVFTFIFISFLLWSFHPFIYHSKRFYTVLL 111
>11_01_0090 + 679162-679472,679579-679588
Length = 106
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 186 AASQTLRAALTKAEAAVPGLNYDLVAGIMRRADIPV 293
A QT A L + +A+ GL DLVAGI + D+ +
Sbjct: 57 ADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCDVNI 92
>06_03_0914 +
25920277-25920405,25920783-25920810,25920890-25920990,
25921356-25921479,25921793-25921903,25922222-25922397,
25922766-25922848,25922935-25923007,25923630-25923695,
25923776-25923818,25924600-25924739,25924878-25925090,
25925397-25925481,25925558-25925852,25926855-25927110,
25927237-25927450,25927701-25927912,25928054-25928203
Length = 832
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 476 DSLKKSLPISYLIWNATQYLFQSSRFLIKLL 384
D +KK L + L+W +FQS+R ++ L
Sbjct: 797 DKVKKLLDVQSLVWQKIDKVFQSARCMVTFL 827
>01_06_0481 - 29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +3
Query: 246 NYDLVAGIMRRADIPVNMNESLLRLQGSLTDSECTDLRLNRTEEAFQELNKKSAALKKIL 425
N DL+ I + + E+L RL+G T+ E + L + A KS+A + +
Sbjct: 1820 NDDLIKKIEESSKTITQLQETLQRLEGKSTNLEAENQVLRQQATATPPSTAKSSASRSKI 1879
Query: 426 SRI 434
+RI
Sbjct: 1880 TRI 1882
>12_01_0421 - 3321590-3323692
Length = 700
Score = 27.9 bits (59), Expect = 9.9
Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Frame = +3
Query: 444 ITDRKTFLETIK----EIASAI-KKLLDAVNEVSTYTPGPGKQV--LEQRKREFVKYSKR 602
+TD K L +++ E A+AI ++L ++ + P PG V L + ++KY+
Sbjct: 421 LTDLKHELNSVRSRLGEFAAAIFRELESSIRADAGKQPVPGGAVHPLTRYVMNYLKYACE 480
Query: 603 FSTTLKEYFKEGQAN 647
+++TL++ F+E A+
Sbjct: 481 YNSTLEQVFREHGAH 495
>10_02_0085 - 5093036-5094285,5094737-5095255,5098698-5099373
Length = 814
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = -3
Query: 631 LKYSLSVVENRFEYFTNSLF----LCSNTCFPGPGVYVDTSFTASSNFFMA 491
+KY+ S VE F F+ F + SN GP +YVD + +AS + +A
Sbjct: 293 IKYNSSFVEILFNMFSQFRFSSQGVVSNIFGKGPNLYVDPTESASVQWAVA 343
>03_05_1010 - 29653973-29654269
Length = 98
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 349 VHSESVRLPCNLNKLSFILTGISALLMI 266
VH S RLP L+ LS L G+S +L++
Sbjct: 36 VHLRSSRLPTPLSALSASLLGVSVVLLV 63
>02_05_0266 + 27280592-27281668
Length = 358
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -3
Query: 367 LFSLKSVHSESVRLPCNLNKLSFILTGISALLMIPA 260
+FSL+ H S +L C LNKL L G + +IP+
Sbjct: 321 VFSLE--HRSSKKLACRLNKLEMALRGETPSWIIPS 354
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,976,257
Number of Sequences: 37544
Number of extensions: 367961
Number of successful extensions: 962
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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