Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16h20f
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa...    31   0.24 
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    27   3.9  
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma...    27   3.9  
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    27   3.9  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   5.1  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    26   6.7  
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ...    26   6.7  
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac...    26   6.7  
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    25   8.9  
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    25   8.9  
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa...    25   8.9  
SPCC1682.05c |||signal recognition particle subunit |Schizosacch...    25   8.9  

>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 652

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 312 NKKESPDNSTSETSGDSLTNAGKEVKGRTHTFYQVLIDTRD 434
           N  +  D++ S  +GDS+    K + G   T+ +  +DT D
Sbjct: 544 NDNQDADDACSYNTGDSIPQVSKSINGHFETYSRTSMDTDD 584


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -1

Query: 290 PCKPWKKYHSTISKHFMQY*LSCVIFARG 204
           P K W+K+H  ++++  +Y +S  + A G
Sbjct: 104 PTKTWRKWHVKVNQNEKRYAISSAVAASG 132


>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 193

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 516 GLDYVAHDDIIPYASVERVPLQHELFD 596
           G +Y+  DD+ P A++E++   H L D
Sbjct: 39  GFEYIEGDDLHPKANIEKMSQGHPLND 65


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 21/72 (29%), Positives = 31/72 (43%)
 Frame = -2

Query: 757 LPI*NGITVTLTPSVVSLCTSLSSNQGWFFFCHARRVSWAMNGGSLSGLCIRNLSKSSCC 578
           LPI   I+ T    ++S CT  SS Q      + + +   +  GS+   C R L K    
Sbjct: 114 LPIVGSISETSVSGIMSTCTHGSSLQHQVLPHYIKSMRIMLADGSIV-TCSRELQKDMFA 172

Query: 577 RGTLSTEA*GII 542
              +S  A G+I
Sbjct: 173 AAQVSLGALGVI 184


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 297 DRDATNKKESPDNSTSETSGDS 362
           D  +TN   S DN+TS+T  DS
Sbjct: 60  DLTSTNNTRSSDNTTSDTEDDS 81


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 255 IQTLYAILTVLCHICPRF*EIRVSQLLPIWYNVL 154
           I+T + +L+      P F  +++SQLL +W N L
Sbjct: 548 IKTGWRLLSAYVSFGPSFTRMQLSQLLILWKNAL 581


>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 560

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 166 PDWQKLGNSNLLKPRAN 216
           P WQ  G++N+L+P  N
Sbjct: 77  PQWQSFGDANILEPLKN 93


>SPCC1827.02c |||cholinephosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +3

Query: 519 LDYVAHDDIIPYAS 560
           +D+VAHDD IPYAS
Sbjct: 180 IDFVAHDD-IPYAS 192


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = -1

Query: 290 PCKPWKKYHSTISKHFMQY*LSCVIFARG 204
           P K W+K+H  ++++  +Y ++  + A G
Sbjct: 104 PTKTWRKWHVKVNQNEKRYAIASAVAASG 132


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 117 LRLTASRLLLTHVAHYTRLAEVGKLES 197
           LR+  +  + T V HYT    +G LES
Sbjct: 625 LRVAVNGYIETAVIHYTECLSIGNLES 651


>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/37 (24%), Positives = 21/37 (56%)
 Frame = +3

Query: 600 FLMHNPDKDPPFIAQETLRAWQKKNHPWLELSDVHRE 710
           F  H  ++DPP  + E ++  ++K   W++ + V ++
Sbjct: 381 FQSHTIEQDPPLPSLEVVKTLKRKEEIWVDENLVKKD 417


>SPCC1682.05c |||signal recognition particle subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 349 VSDVELSGLSFLFVASRS*TLASHGKSITPRYPNTL 242
           +S   +S LSFL + ++  TLA H KS+     N +
Sbjct: 191 LSAFSISRLSFLVLQNKIDTLAEHEKSVLGELQNQI 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,257,045
Number of Sequences: 5004
Number of extensions: 70266
Number of successful extensions: 195
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)