Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16h20f
(761 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC009265-1|AAH09265.1| 368|Homo sapiens polymerase (DNA-directe... 281 1e-75
BC000655-1|AAH00655.1| 368|Homo sapiens polymerase (DNA-directe... 281 1e-75
AF179891-1|AAK92018.1| 368|Homo sapiens putative DNA polymerase... 281 1e-75
U23752-1|AAB08518.1| 441|Homo sapiens SOX-11 protein. 32 1.9
AC108025-1|AAX88930.1| 441|Homo sapiens unknown protein. 32 1.9
AB028641-1|BAA88122.1| 441|Homo sapiens SOX11 protein. 32 1.9
>BC009265-1|AAH09265.1| 368|Homo sapiens polymerase (DNA-directed),
delta interacting protein 2 protein.
Length = 368
Score = 281 bits (690), Expect = 1e-75
Identities = 128/199 (64%), Positives = 159/199 (79%), Gaps = 2/199 (1%)
Frame = +3
Query: 171 LAEVGKLESPKTSGKYDTGQLILHKVFGYRGVILFPWLARVYDRDATNKKESPDNSTSET 350
L VG E PK +GKY+TGQL LH +FGYRGV+LFPW AR+YDRD + +P+ + +
Sbjct: 62 LETVGVFEVPKQNGKYETGQLFLHSIFGYRGVVLFPWQARLYDRDVASA--APEKAENPA 119
Query: 351 SGDSLTNAGKEVKGRTHTFYQVLIDTRDAPYI--RAQTEAVTFLGNQESSRSLYAIPGLD 524
S KEVKG+THT+YQVLID RD P+I R+QTEAVTFL N + SR+LYAIPGLD
Sbjct: 120 GHGS-----KEVKGKTHTYYQVLIDARDCPHISQRSQTEAVTFLANHDDSRALYAIPGLD 174
Query: 525 YVAHDDIIPYASVERVPLQHELFDKFLMHNPDKDPPFIAQETLRAWQKKNHPWLELSDVH 704
YV+H+DI+PY S ++VP+QHELF++FL+++ K PPF+A+ETLRAWQ+KNHPWLELSDVH
Sbjct: 175 YVSHEDILPYTSTDQVPIQHELFERFLLYDQTKAPPFVARETLRAWQEKNHPWLELSDVH 234
Query: 705 RETTEGVRVTVIPFYMGSR 761
RETTE +RVTVIPFYMG R
Sbjct: 235 RETTENIRVTVIPFYMGMR 253
>BC000655-1|AAH00655.1| 368|Homo sapiens polymerase (DNA-directed),
delta interacting protein 2 protein.
Length = 368
Score = 281 bits (690), Expect = 1e-75
Identities = 128/199 (64%), Positives = 159/199 (79%), Gaps = 2/199 (1%)
Frame = +3
Query: 171 LAEVGKLESPKTSGKYDTGQLILHKVFGYRGVILFPWLARVYDRDATNKKESPDNSTSET 350
L VG E PK +GKY+TGQL LH +FGYRGV+LFPW AR+YDRD + +P+ + +
Sbjct: 62 LETVGVFEVPKQNGKYETGQLFLHSIFGYRGVVLFPWQARLYDRDVASA--APEKAENPA 119
Query: 351 SGDSLTNAGKEVKGRTHTFYQVLIDTRDAPYI--RAQTEAVTFLGNQESSRSLYAIPGLD 524
S KEVKG+THT+YQVLID RD P+I R+QTEAVTFL N + SR+LYAIPGLD
Sbjct: 120 GHGS-----KEVKGKTHTYYQVLIDARDCPHISQRSQTEAVTFLANHDDSRALYAIPGLD 174
Query: 525 YVAHDDIIPYASVERVPLQHELFDKFLMHNPDKDPPFIAQETLRAWQKKNHPWLELSDVH 704
YV+H+DI+PY S ++VP+QHELF++FL+++ K PPF+A+ETLRAWQ+KNHPWLELSDVH
Sbjct: 175 YVSHEDILPYTSTDQVPIQHELFERFLLYDQTKAPPFVARETLRAWQEKNHPWLELSDVH 234
Query: 705 RETTEGVRVTVIPFYMGSR 761
RETTE +RVTVIPFYMG R
Sbjct: 235 RETTENIRVTVIPFYMGMR 253
>AF179891-1|AAK92018.1| 368|Homo sapiens putative DNA polymerase
delta p38 subunit protein.
Length = 368
Score = 281 bits (690), Expect = 1e-75
Identities = 128/199 (64%), Positives = 159/199 (79%), Gaps = 2/199 (1%)
Frame = +3
Query: 171 LAEVGKLESPKTSGKYDTGQLILHKVFGYRGVILFPWLARVYDRDATNKKESPDNSTSET 350
L VG E PK +GKY+TGQL LH +FGYRGV+LFPW AR+YDRD + +P+ + +
Sbjct: 62 LETVGVFEVPKQNGKYETGQLFLHSIFGYRGVVLFPWQARLYDRDVASA--APEKAENPA 119
Query: 351 SGDSLTNAGKEVKGRTHTFYQVLIDTRDAPYI--RAQTEAVTFLGNQESSRSLYAIPGLD 524
S KEVKG+THT+YQVLID RD P+I R+QTEAVTFL N + SR+LYAIPGLD
Sbjct: 120 GHGS-----KEVKGKTHTYYQVLIDARDCPHISQRSQTEAVTFLANHDDSRALYAIPGLD 174
Query: 525 YVAHDDIIPYASVERVPLQHELFDKFLMHNPDKDPPFIAQETLRAWQKKNHPWLELSDVH 704
YV+H+DI+PY S ++VP+QHELF++FL+++ K PPF+A+ETLRAWQ+KNHPWLELSDVH
Sbjct: 175 YVSHEDILPYTSTDQVPIQHELFERFLLYDQTKAPPFVARETLRAWQEKNHPWLELSDVH 234
Query: 705 RETTEGVRVTVIPFYMGSR 761
RETTE +RVTVIPFYMG R
Sbjct: 235 RETTENIRVTVIPFYMGMR 253
>U23752-1|AAB08518.1| 441|Homo sapiens SOX-11 protein.
Length = 441
Score = 32.3 bits (70), Expect = 1.9
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -3
Query: 711 SPCARR*ALTKDGSSSATPAGSLGQ*TADLYQDCALGIYRRAHAVGE 571
SP + R T SSS + +GS G+ DL D +L + AH+ E
Sbjct: 332 SPASSRSVSTSSSSSSGSSSGSSGEDADDLMFDLSLNFSQSAHSASE 378
>AC108025-1|AAX88930.1| 441|Homo sapiens unknown protein.
Length = 441
Score = 32.3 bits (70), Expect = 1.9
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -3
Query: 711 SPCARR*ALTKDGSSSATPAGSLGQ*TADLYQDCALGIYRRAHAVGE 571
SP + R T SSS + +GS G+ DL D +L + AH+ E
Sbjct: 332 SPASSRSVSTSSSSSSGSSSGSSGEDADDLMFDLSLNFSQSAHSASE 378
>AB028641-1|BAA88122.1| 441|Homo sapiens SOX11 protein.
Length = 441
Score = 32.3 bits (70), Expect = 1.9
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -3
Query: 711 SPCARR*ALTKDGSSSATPAGSLGQ*TADLYQDCALGIYRRAHAVGE 571
SP + R T SSS + +GS G+ DL D +L + AH+ E
Sbjct: 332 SPASSRSVSTSSSSSSGSSSGSSGEDADDLMFDLSLNFSQSAHSASE 378
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,723,046
Number of Sequences: 237096
Number of extensions: 2416252
Number of successful extensions: 4804
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4797
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9144232952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -