Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16h20f
         (761 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14429-6|AAK93870.2|  342|Caenorhabditis elegans Temporarily ass...    83   3e-16
AF068708-3|AAC17754.1|  253|Caenorhabditis elegans Histone h1 li...    33   0.22 
AF005371-1|AAB81029.1|  253|Caenorhabditis elegans histone H1.4 ...    33   0.22 
AF026521-1|AAB82588.1|  253|Caenorhabditis elegans histone H1.4 ...    32   0.39 
Z78417-4|CAB01685.2|  531|Caenorhabditis elegans Hypothetical pr...    28   6.3  

>L14429-6|AAK93870.2|  342|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 307 protein.
          Length = 342

 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 66/237 (27%), Positives = 108/237 (45%), Gaps = 12/237 (5%)
 Frame = +3

Query: 84  ELLLRFASSNPLR-LTASRLLLTHVAHYTR--LAEVGKLESPKTSGKYDTGQLILHKVFG 254
           ++ LR A  + +R  +A ++LL+     T   L E+G L        ++ GQ+ +HK F 
Sbjct: 8   DMKLRSAIQHSVRNFSAGKVLLSRFRSATTPILKEIGLLLPSTNKPTFEAGQIFIHKTFA 67

Query: 255 YRGVILFPWLARVYDRDATNKKESPDNSTSETSGDSLTNAGKEVKGRTHTFYQVLIDTRD 434
           Y+GV++  +  R+++      K S  N               E    T  FYQVLI   D
Sbjct: 68  YKGVVVCSFPCRLHE------KRSQQN---------------EKHLLTRDFYQVLIHRYD 106

Query: 435 APYIRAQTEAVTFL------GNQESSRSLYAIPGLDYVAHDDIIPYASVERVPLQHELFD 596
             ++    +  ++L        +   + L  I G+D V+H+DIIP+     V   H+LFD
Sbjct: 107 WSHMGFPVDITSYLVDAPMENKRHGQKMLTLINGMDCVSHEDIIPFTPSGGVNFDHDLFD 166

Query: 597 KFLMHNPDKDPPF---IAQETLRAWQKKNHPWLELSDVHRETTEGVRVTVIPFYMGS 758
                + D    +   +  E +  +   N  WL   DV+RE TE + VTV+ FY+G+
Sbjct: 167 HIFNASHDGIGLYDIAMKPELVERYTNPNRSWLGPRDVYRERTENIEVTVMTFYLGA 223


>AF068708-3|AAC17754.1|  253|Caenorhabditis elegans Histone h1 like
           protein 4 protein.
          Length = 253

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = +3

Query: 303 DATNKKESPDNSTSETSGDSLTNAGKEVKGRTHTFYQVLIDTRDAPYIRAQTEAVTFLGN 482
           D T    +P  ++  T     T A K  K +T     V  D    P+I   TEA++ + +
Sbjct: 9   DTTETPAAPTKASKATKASKATKASKATKAKTTKVPMVKADAAHPPFINMVTEAISSIKD 68

Query: 483 QE 488
           ++
Sbjct: 69  RK 70


>AF005371-1|AAB81029.1|  253|Caenorhabditis elegans histone H1.4
           protein.
          Length = 253

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = +3

Query: 303 DATNKKESPDNSTSETSGDSLTNAGKEVKGRTHTFYQVLIDTRDAPYIRAQTEAVTFLGN 482
           D T    +P  ++  T     T A K  K +T     V  D    P+I   TEA++ + +
Sbjct: 9   DTTETPAAPTKASKATKASKATKASKATKAKTTKVPMVKADAAHPPFINMVTEAISSIKD 68

Query: 483 QE 488
           ++
Sbjct: 69  RK 70


>AF026521-1|AAB82588.1|  253|Caenorhabditis elegans histone H1.4
           protein.
          Length = 253

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = +3

Query: 303 DATNKKESPDNSTSETSGDSLTNAGKEVKGRTHTFYQVLIDTRDAPYIRAQTEAVTFLGN 482
           D T    +P  ++  T     T A K  K +T     V  D    P+I   TEA++ + +
Sbjct: 9   DTTETPAAPTKASKATKASKATKAPKATKAKTTKVPMVKADAAHPPFINMVTEAISSIKD 68

Query: 483 QE 488
           ++
Sbjct: 69  RK 70


>Z78417-4|CAB01685.2|  531|Caenorhabditis elegans Hypothetical
           protein C35C5.5 protein.
          Length = 531

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 390 GRTHTFYQVLIDTRDAPYIRAQTEAVTFL 476
           G T   YQ+ +D  D P ++ Q + V FL
Sbjct: 178 GETLDLYQIPVDVDDIPQVKRQDDGVEFL 206


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,876,899
Number of Sequences: 27780
Number of extensions: 391679
Number of successful extensions: 918
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)