Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16h18f
(801 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ... 29 0.58
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce... 27 2.3
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 27 2.3
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 27 3.1
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 26 5.4
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 26 5.4
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 7.2
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 26 7.2
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 25 9.5
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe... 25 9.5
>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 29.5 bits (63), Expect = 0.58
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 201 PTTTTFQLLPVSMENSTILHTVALSLDLPVAVSPVKYLMFTLLL 332
P+ T +L ++IL T+ SL + VSP Y +FT LL
Sbjct: 89 PSKKTLVVLGAGWGATSILRTIDTSLFNVIVVSPRNYFLFTSLL 132
>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 698
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 712 FGKSNANDIYPVVLTSISSFTEWILQN 792
FG S AN + PV L S SFT +++++
Sbjct: 243 FGNSFANGLPPVFLNSSRSFTSYLVKS 269
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 96 RSLAVQLQTAASTATAKVRTETIVPIESN 10
R L + + A +A+ K+ TE I+P ESN
Sbjct: 605 RQLHIDFENPAVSASEKLSTEEIIPQESN 633
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 27.1 bits (57), Expect = 3.1
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = -3
Query: 604 SHDAIMTLVLFPAVFFVGHNEFELVEVAVRYTAALNGSSPSEQINKNTLGYYDTLLDNST 425
S+D I L+ F H+E + +Y L E+ +N GYYD D S
Sbjct: 568 SYDEIRPLISILPEFAALHSEEHRMAAFDKYIRRLREKRELEKQYQNRRGYYDVGKDESY 627
Query: 424 L 422
L
Sbjct: 628 L 628
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 26.2 bits (55), Expect = 5.4
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +3
Query: 177 NSALVLFSPTTTT-FQLLPVSMENSTI--LHTVALSLDLPVAVSPVKYLMFTLLLTIPNS 347
N L+ F T T LLP++ I ++TV LSL + S V+ L+F +L +
Sbjct: 290 NLILISFLSTKTDKIVLLPINALKDLIQRVYTVQLSLPVKSVESSVQALLFMVLPHLHTL 349
Query: 348 LRRITTRM 371
+ +T ++
Sbjct: 350 VNELTLKL 357
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 322 VNIRYFTGLTATGRSSDNATVCRIVEFSME 233
+N+ Y + L+ATG S + TV I E + E
Sbjct: 94 INVEYQSNLSATGESVNTTTVSAINEDTRE 123
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = -2
Query: 716 PKDTMPTSAFGRRQGHPSQYCRSRGHQPGQNRRRICYQSRRDH 588
P + S + + H S+Y R+R PG N QS H
Sbjct: 195 PSRSQNNSHYNDKSFHRSRYSRARSRSPGSNISEYSDQSPPYH 237
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1
Query: 211 LPFNCYLFPWRILRSCIPSHYRWIFP 288
LP + + F W +C P H WI P
Sbjct: 426 LPISMFWFAW----TCYPHHIHWIVP 447
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +1
Query: 682 LPNALVGI-VSFGKSNANDIYPVVLTSISSFTEWILQ 789
L NAL + V FGK+ +ND+ L + + T+W+L+
Sbjct: 612 LLNALAPLCVFFGKAKSNDLILSHLITYLNDTDWMLR 648
>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 706 VSFGKSNANDIYPVVLTSISSFTEWILQN 792
+SF K D YP + + FT+ ++QN
Sbjct: 122 ISFSKPKTVDNYPEYIQHLPGFTKKVVQN 150
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,537,606
Number of Sequences: 5004
Number of extensions: 78686
Number of successful extensions: 243
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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