Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16h14f
(791 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine rece... 27 0.26
DQ244075-1|ABB36785.1| 548|Apis mellifera cytochrome P450 monoo... 24 1.9
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 24 1.9
AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein. 24 1.9
DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex det... 23 3.3
DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex det... 23 3.3
DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex det... 23 3.3
AB244761-1|BAE66603.1| 504|Apis mellifera cystathionine beta-sy... 23 3.3
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase... 23 4.3
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 22 7.5
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 22 7.5
>AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine
receptor protein.
Length = 694
Score = 26.6 bits (56), Expect = 0.26
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Frame = -1
Query: 284 NNRVDRRRSSATVTVY-YYD-----NIRIIVKGRSSIVSSGKVVFGEC 159
N+ ++R SA V + YYD N+ V SSI SSG V GEC
Sbjct: 126 NDYINRLNYSAFVNLTAYYDGGANLNLNGTVNCTSSIASSGVVSAGEC 173
>DQ244075-1|ABB36785.1| 548|Apis mellifera cytochrome P450
monooxygenase protein.
Length = 548
Score = 23.8 bits (49), Expect = 1.9
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +3
Query: 546 DWENNVLRLGTNDAQYVEVIH 608
DW N+ + G N + +E+IH
Sbjct: 232 DWLFNLTKYGKNQIKLLEIIH 252
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 23.8 bits (49), Expect = 1.9
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +3
Query: 297 LTSGDYNVIVVDWSSF 344
+ +GDY V+ +WSSF
Sbjct: 379 IQNGDYVVLETEWSSF 394
>AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein.
Length = 238
Score = 23.8 bits (49), Expect = 1.9
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +3
Query: 297 LTSGDYNVIVVDWSSF 344
+ +GDY V+ +WSSF
Sbjct: 85 IQNGDYVVLETEWSSF 100
>DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.0 bits (47), Expect = 3.3
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 702 TNNLCSHNRAYEVFCCNNYAWQHY 773
+NN +N Y+ CNNY +Y
Sbjct: 86 SNNYNYNNNNYKKLYCNNYKKLYY 109
>DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.0 bits (47), Expect = 3.3
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 702 TNNLCSHNRAYEVFCCNNYAWQHY 773
+NN +N Y+ CNNY +Y
Sbjct: 86 SNNYNYNNNNYKKLYCNNYKKLYY 109
>DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.0 bits (47), Expect = 3.3
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 702 TNNLCSHNRAYEVFCCNNYAWQHY 773
+NN +N Y+ CNNY +Y
Sbjct: 86 SNNYNYNNNNYKKLYCNNYRKLYY 109
>AB244761-1|BAE66603.1| 504|Apis mellifera cystathionine
beta-synthase protein.
Length = 504
Score = 23.0 bits (47), Expect = 3.3
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -3
Query: 786 CTDFRNVAMRNCCSKKLHKRGCGYIS 709
CTDF + AM K H GYIS
Sbjct: 434 CTDFVDKAMVKQYVKVKHSATLGYIS 459
>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
protein.
Length = 1143
Score = 22.6 bits (46), Expect = 4.3
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +2
Query: 47 FVGHRICRLQRRCHSKLGAIWKF 115
F HR+ ++RR + G +W F
Sbjct: 983 FWHHRLAEIKRRPDLEYGKVWLF 1005
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.5
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 222 DIVVIIHGHSGTATTTINPIVK 287
+IVVI H SG +TTT + I K
Sbjct: 9 NIVVIGHVDSGKSTTTGHLIYK 30
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.5
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 222 DIVVIIHGHSGTATTTINPIVK 287
+IVVI H SG +TTT + I K
Sbjct: 9 NIVVIGHVDSGKSTTTGHLIYK 30
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,934
Number of Sequences: 438
Number of extensions: 5009
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -