Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16h13f
         (410 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein S28|Schizosa...    73   2e-14
SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein S28|Sc...    73   2e-14
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    27   0.86 
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    27   1.5  
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    25   4.6  
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    24   8.0  
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom...    24   8.0  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    24   8.0  

>SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein
           S28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 68

 Score = 72.9 bits (171), Expect = 2e-14
 Identities = 34/49 (69%), Positives = 42/49 (85%)
 Frame = +1

Query: 82  PNVLARVVKLLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 228
           P  LA+V+K+LGRTGS+G  TQV+VEF+ +TSR IIRNVKGPVR+ DIL
Sbjct: 7   PVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55


>SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein
           S28|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 68

 Score = 72.9 bits (171), Expect = 2e-14
 Identities = 34/49 (69%), Positives = 42/49 (85%)
 Frame = +1

Query: 82  PNVLARVVKLLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 228
           P  LA+V+K+LGRTGS+G  TQV+VEF+ +TSR IIRNVKGPVR+ DIL
Sbjct: 7   PVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 27.5 bits (58), Expect = 0.86
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 155 SSSLGRPAVRSSET*KDPSVTETSSLFLNLNVKL 256
           ++S+  PAV SSET    S+T T S + + +V +
Sbjct: 203 TTSVNSPAVSSSETLTSVSITSTESAYTSSSVDI 236


>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 112 AISRHEQERWVYPFWLVISSLMQLTHVHQSWRVSK 8
           AIS+    RWVYPF +  S+L+  T  +Q  ++ K
Sbjct: 282 AISKDVLSRWVYPF-VPDSNLLNQTFSYQRHQIYK 315


>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -1

Query: 137 WP*EPV-RPSNFTTRARTLGLSILACNIE 54
           WP +P  R SN    A  +G+SI+AC IE
Sbjct: 498 WPGDPTFRKSNDVCIA-LIGVSIIACGIE 525


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 397 LCIYSELNTIKWSS 356
           LC+  + NT+KW+S
Sbjct: 622 LCVIGDSNTVKWAS 635


>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 326

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 9/38 (23%), Positives = 22/38 (57%)
 Frame = +1

Query: 67  AKMDKPNVLARVVKLLGRTGSQGQCTQVKVEFIGETSR 180
           A +D+P  + ++V+ +  T  +  CT+VK+    + ++
Sbjct: 121 ALLDEPEKVHKLVRAVKSTLGESFCTEVKIRIAKDLNK 158


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 216 VTDGSFHVSDDLTAGLPNELDLHLSTLAL 130
           +T+G     D+++   PN  DL LS+LAL
Sbjct: 435 ITEGVNPTLDEVSKFNPNNEDLDLSSLAL 463


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,657,737
Number of Sequences: 5004
Number of extensions: 29341
Number of successful extensions: 64
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)