Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16h13f
         (410 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024776-21|AAK68479.1|   65|Caenorhabditis elegans Ribosomal pr...    79   9e-16
AF040645-9|AAB94972.2|  197|Caenorhabditis elegans Hypothetical ...    30   0.75 
Z81129-4|CAB03405.1|  330|Caenorhabditis elegans Hypothetical pr...    28   2.3  
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    27   5.3  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    27   5.3  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    27   5.3  
Z81116-3|CAB03303.1|  346|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U28929-1|AAN63410.1|  418|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z81513-6|CAB04176.1|  341|Caenorhabditis elegans Hypothetical pr...    26   9.2  
Z78546-7|CAB01772.1|  375|Caenorhabditis elegans Hypothetical pr...    26   9.2  
L23645-9|AAK26134.1| 1226|Caenorhabditis elegans Hypothetical pr...    26   9.2  
AL023830-4|CAA19474.1|  375|Caenorhabditis elegans Hypothetical ...    26   9.2  

>AC024776-21|AAK68479.1|   65|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 28 protein.
          Length = 65

 Score = 79.4 bits (187), Expect = 9e-16
 Identities = 40/54 (74%), Positives = 46/54 (85%), Gaps = 1/54 (1%)
 Frame = +1

Query: 73  MDKPNVLARVVKLLGRTGSQGQCTQVKVEFIG-ETSRQIIRNVKGPVRDGDILT 231
           MDK   LARV K++GRTGSQGQCTQV+VEFI  + +R IIRNVKGPVR+GDILT
Sbjct: 1   MDKLT-LARVTKVIGRTGSQGQCTQVRVEFINDQNNRSIIRNVKGPVREGDILT 53


>AF040645-9|AAB94972.2|  197|Caenorhabditis elegans Hypothetical
           protein F52C6.3 protein.
          Length = 197

 Score = 29.9 bits (64), Expect = 0.75
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +2

Query: 173 PAVRSSET*KDPSVTETSSLFLNLNVKLGGCDRLLQHYCIRL 298
           P   S E  +DP   E+S +  NLNVK+    + L H  IR+
Sbjct: 64  PLRESEEVTEDPISVESSEVIGNLNVKVAETQQELHHEGIRI 105


>Z81129-4|CAB03405.1|  330|Caenorhabditis elegans Hypothetical
           protein T23F1.6 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 12  ETRQLWCTCVNCIKLDITSQNG*TQRSCSCR 104
           ETRQ  C C   ++   + Q    Q SCSC+
Sbjct: 22  ETRQASCGCAQSVQPTCSCQQASQQYSCSCQ 52


>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
            protein K07E12.1b protein.
          Length = 12268

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 145  EYTGPENQYGQAISRHEQERWVYP 74
            E TGPE+Q    +S++E+  WVYP
Sbjct: 8246 EPTGPEDQ---KLSKNEKGEWVYP 8266



 Score = 27.1 bits (57), Expect = 5.3
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 145  EYTGPENQYGQAISRHEQERWVYP 74
            E TGPE+Q    +S++E+  WVYP
Sbjct: 9290 EPTGPEDQ---KLSKNEKGEWVYP 9310


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
            protein K07E12.1a protein.
          Length = 13100

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 145  EYTGPENQYGQAISRHEQERWVYP 74
            E TGPE+Q    +S++E+  WVYP
Sbjct: 8291 EPTGPEDQ---KLSKNEKGEWVYP 8311



 Score = 27.1 bits (57), Expect = 5.3
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 145  EYTGPENQYGQAISRHEQERWVYP 74
            E TGPE+Q    +S++E+  WVYP
Sbjct: 9335 EPTGPEDQ---KLSKNEKGEWVYP 9355


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
            protein.
          Length = 13100

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 145  EYTGPENQYGQAISRHEQERWVYP 74
            E TGPE+Q    +S++E+  WVYP
Sbjct: 8291 EPTGPEDQ---KLSKNEKGEWVYP 8311



 Score = 27.1 bits (57), Expect = 5.3
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 145  EYTGPENQYGQAISRHEQERWVYP 74
            E TGPE+Q    +S++E+  WVYP
Sbjct: 9335 EPTGPEDQ---KLSKNEKGEWVYP 9355


>Z81116-3|CAB03303.1|  346|Caenorhabditis elegans Hypothetical
           protein T06C12.3 protein.
          Length = 346

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 403 FMLCIYSELNTIKWSSLTVL*V*HINLCRWY 311
           + L +YSE N I+W  L+++    I LC  Y
Sbjct: 180 YTLALYSESNVIQWEILSLIIAAGIVLCFQY 210


>U28929-1|AAN63410.1|  418|Caenorhabditis elegans Hypothetical
           protein F09C12.2 protein.
          Length = 418

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 145 QVKVEFIGETSRQIIRNVKGP-VRD 216
           Q+ +E++G    Q+IR +K P +RD
Sbjct: 267 QLLIEYLGTPDEQVIRRIKSPSIRD 291


>Z81513-6|CAB04176.1|  341|Caenorhabditis elegans Hypothetical
           protein F26D2.7 protein.
          Length = 341

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 403 FMLCIYSELNTIKWSSLTVL*V*HINLCRWY 311
           F++  Y+E NTI+W +L++L    I +C  Y
Sbjct: 180 FIMMPYNENNTIQWKALSLLISAGILICFQY 210


>Z78546-7|CAB01772.1|  375|Caenorhabditis elegans Hypothetical
           protein T21H8.4 protein.
          Length = 375

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +2

Query: 224 SSLFLNLNVKLGGCDRLLQ-HYCIRLR 301
           ++ FLNL +K   CD LL+ ++C ++R
Sbjct: 74  TNFFLNLMIKPSPCDLLLKTYFCSKIR 100


>L23645-9|AAK26134.1| 1226|Caenorhabditis elegans Hypothetical
           protein F54F2.1 protein.
          Length = 1226

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -3

Query: 189 DDLTAGLPNELDLHLSTLALRTSTAKQFHDTSKNVGFIH 73
           DD+ AG+P   DLH   L L TS  K   + +  V   H
Sbjct: 262 DDIVAGVPRGNDLH-GKLVLYTSKLKMMINLTDEVSTQH 299


>AL023830-4|CAA19474.1|  375|Caenorhabditis elegans Hypothetical
           protein T21H8.4 protein.
          Length = 375

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +2

Query: 224 SSLFLNLNVKLGGCDRLLQ-HYCIRLR 301
           ++ FLNL +K   CD LL+ ++C ++R
Sbjct: 74  TNFFLNLMIKPSPCDLLLKTYFCSKIR 100


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,154,872
Number of Sequences: 27780
Number of extensions: 166775
Number of successful extensions: 383
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)