Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16h12f
(777 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY219181-1|AAO60072.1| 4243|Homo sapiens fibrocystin L protein. 33 1.1
AY312160-1|AAQ82434.1| 1569|Homo sapiens mucin glycoprotein prot... 31 3.5
U72355-1|AAC00056.1| 915|Homo sapiens Hsp27 ERE-TATA-binding pr... 31 4.6
L43631-1|AAC18697.1| 864|Homo sapiens scaffold attachment facto... 31 4.6
BC126219-1|AAI26220.1| 917|Homo sapiens scaffold attachment fac... 31 4.6
AB208780-1|BAD92017.1| 772|Homo sapiens scaffold attachment fac... 31 4.6
BC059387-1|AAH59387.1| 1043|Homo sapiens myosin IA protein. 31 6.1
AL834438-1|CAD39098.1| 1097|Homo sapiens hypothetical protein pr... 31 6.1
AL772337-4|CAI23630.2| 1445|Homo sapiens chromosome 9 open readi... 31 6.1
AK125845-1|BAC86315.1| 1445|Homo sapiens protein ( Homo sapiens ... 31 6.1
AK093185-1|BAC04087.1| 663|Homo sapiens protein ( Homo sapiens ... 31 6.1
AF127026-1|AAD31189.1| 1043|Homo sapiens brush border myosin I p... 31 6.1
AF105424-1|AAC78645.1| 1043|Homo sapiens brush border myosin I p... 31 6.1
AF009961-1|AAC27437.1| 1043|Homo sapiens brush border myosin-I p... 31 6.1
>AY219181-1|AAO60072.1| 4243|Homo sapiens fibrocystin L protein.
Length = 4243
Score = 33.1 bits (72), Expect = 1.1
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Frame = +2
Query: 206 VEKAEGDYTFPISDIFSASGTVAELALEGISNVVVNDVTFNLLRPTTFSIDLALPKLSAS 385
+++ DYT + +I S +GT AE A E +S V D++ + P T+++ L P + +
Sbjct: 2040 IDRLRSDYTTLLCEIPSNNGTGAEQACE-VSVVNGKDLS-QSMTPFTYAVSLT-PLI--T 2094
Query: 386 AVAVNGQATIFGRELAVASSG-SLVVEDIRL 475
AV+ +T G L V SG S +ED+ +
Sbjct: 2095 AVSPKRGSTAGGTRLTVVGSGFSENMEDVHI 2125
>AY312160-1|AAQ82434.1| 1569|Homo sapiens mucin glycoprotein protein.
Length = 1569
Score = 31.5 bits (68), Expect = 3.5
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = -1
Query: 591 TSLPKRTTLRADSTLPTVRTALSSLTLMLGSNRKLTVETRRISSTTRLPLLATANSLPKM 412
+ LP TLR+ +T PTV A + T S + +T LP AT+ + P +
Sbjct: 1283 SGLPPTATLRSTATKPTVTQATTRATASTASPATTSTAQSTTRTTMTLPTPATSGTSPTL 1342
>U72355-1|AAC00056.1| 915|Homo sapiens Hsp27 ERE-TATA-binding
protein protein.
Length = 915
Score = 31.1 bits (67), Expect = 4.6
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 370 GEGKVDAECSWSQKVESDVIDDNVADALESQFGYCARCAED 248
G+G+ D E S + D++D +V D E G A C ED
Sbjct: 110 GDGQEDVETSLENLQDIDIMDISVLDEAEIDNGSVADCVED 150
>L43631-1|AAC18697.1| 864|Homo sapiens scaffold attachment factor B
protein.
Length = 864
Score = 31.1 bits (67), Expect = 4.6
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 370 GEGKVDAECSWSQKVESDVIDDNVADALESQFGYCARCAED 248
G+G+ D E S + D++D +V D E G A C ED
Sbjct: 59 GDGQEDVETSLENLQDIDIMDISVLDEAEIDNGSVADCVED 99
>BC126219-1|AAI26220.1| 917|Homo sapiens scaffold attachment factor
B protein.
Length = 917
Score = 31.1 bits (67), Expect = 4.6
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 370 GEGKVDAECSWSQKVESDVIDDNVADALESQFGYCARCAED 248
G+G+ D E S + D++D +V D E G A C ED
Sbjct: 110 GDGQEDVETSLENLQDIDIMDISVLDEAEIDNGSVADCVED 150
>AB208780-1|BAD92017.1| 772|Homo sapiens scaffold attachment factor
B variant protein.
Length = 772
Score = 31.1 bits (67), Expect = 4.6
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 370 GEGKVDAECSWSQKVESDVIDDNVADALESQFGYCARCAED 248
G+G+ D E S + D++D +V D E G A C ED
Sbjct: 130 GDGQEDVETSLENLQDIDIMDISVLDEAEIDNGSVADCVED 170
>BC059387-1|AAH59387.1| 1043|Homo sapiens myosin IA protein.
Length = 1043
Score = 30.7 bits (66), Expect = 6.1
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = -3
Query: 730 HIKAAVYKNIVDDEEDNTLNDLPDLLVVSFEEFGKSVVQSVIQLFGYVVAEENNFES-GL 554
+ + A+ KNI D +N + + + V E K V V+ ++G+ + E+N+FE +
Sbjct: 340 YARDALAKNIYSRLFDWIVNRINESIKVGIGE--KKKVMGVLDIYGFEILEDNSFEQFVI 397
Query: 553 NIANSK 536
N N K
Sbjct: 398 NYCNEK 403
>AL834438-1|CAD39098.1| 1097|Homo sapiens hypothetical protein
protein.
Length = 1097
Score = 30.7 bits (66), Expect = 6.1
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 616 EQQTSRTPRNLQRADQGDR*AYYPLHHQQYFCKQPP*C 729
++ R PR Q AD R +P H+ C QPP C
Sbjct: 579 QEGVQRPPRGSQSADTHGRSEAFPTGHKGRGCSQPPTC 616
>AL772337-4|CAI23630.2| 1445|Homo sapiens chromosome 9 open reading
frame 79 protein.
Length = 1445
Score = 30.7 bits (66), Expect = 6.1
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 616 EQQTSRTPRNLQRADQGDR*AYYPLHHQQYFCKQPP*C 729
++ R PR Q AD R +P H+ C QPP C
Sbjct: 927 QEGVQRPPRGSQSADTHGRSEAFPTGHKGRGCSQPPTC 964
>AK125845-1|BAC86315.1| 1445|Homo sapiens protein ( Homo sapiens cDNA
FLJ43857 fis, clone TESTI4007239. ).
Length = 1445
Score = 30.7 bits (66), Expect = 6.1
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 616 EQQTSRTPRNLQRADQGDR*AYYPLHHQQYFCKQPP*C 729
++ R PR Q AD R +P H+ C QPP C
Sbjct: 927 QEGVQRPPRGSQSADTHGRSEAFPTGHKGRGCSQPPTC 964
>AK093185-1|BAC04087.1| 663|Homo sapiens protein ( Homo sapiens
cDNA FLJ35866 fis, clone TESTI2007906. ).
Length = 663
Score = 30.7 bits (66), Expect = 6.1
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 616 EQQTSRTPRNLQRADQGDR*AYYPLHHQQYFCKQPP*C 729
++ R PR Q AD R +P H+ C QPP C
Sbjct: 145 QEGVQRPPRGSQSADTHGRSEAFPTGHKGRGCSQPPTC 182
>AF127026-1|AAD31189.1| 1043|Homo sapiens brush border myosin I
protein.
Length = 1043
Score = 30.7 bits (66), Expect = 6.1
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = -3
Query: 730 HIKAAVYKNIVDDEEDNTLNDLPDLLVVSFEEFGKSVVQSVIQLFGYVVAEENNFES-GL 554
+ + A+ KNI D +N + + + V E K V V+ ++G+ + E+N+FE +
Sbjct: 340 YARDALAKNIYSRLFDWIVNRINESIKVGIGE--KKKVMGVLDIYGFEILEDNSFEQFVI 397
Query: 553 NIANSK 536
N N K
Sbjct: 398 NYCNEK 403
>AF105424-1|AAC78645.1| 1043|Homo sapiens brush border myosin I
protein.
Length = 1043
Score = 30.7 bits (66), Expect = 6.1
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = -3
Query: 730 HIKAAVYKNIVDDEEDNTLNDLPDLLVVSFEEFGKSVVQSVIQLFGYVVAEENNFES-GL 554
+ + A+ KNI D +N + + + V E K V V+ ++G+ + E+N+FE +
Sbjct: 340 YARDALAKNIYSRLFDWIVNRINESIKVGIGE--KKKVMGVLDIYGFEILEDNSFEQFVI 397
Query: 553 NIANSK 536
N N K
Sbjct: 398 NYCNEK 403
>AF009961-1|AAC27437.1| 1043|Homo sapiens brush border myosin-I
protein.
Length = 1043
Score = 30.7 bits (66), Expect = 6.1
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = -3
Query: 730 HIKAAVYKNIVDDEEDNTLNDLPDLLVVSFEEFGKSVVQSVIQLFGYVVAEENNFES-GL 554
+ + A+ KNI D +N + + + V E K V V+ ++G+ + E+N+FE +
Sbjct: 340 YARDALAKNIYSRLFDWIVNRINESIKVGIGE--KKKVMGVLDIYGFEILEDNSFEQFVI 397
Query: 553 NIANSK 536
N N K
Sbjct: 398 NYCNEK 403
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,699,950
Number of Sequences: 237096
Number of extensions: 1750058
Number of successful extensions: 4107
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4107
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9423020542
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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