Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16h01f
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...   257   2e-69
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc...    32   0.11 
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    29   0.58 
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    28   1.8  
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces...    27   4.1  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    26   5.4  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    26   7.2  

>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score =  257 bits (629), Expect = 2e-69
 Identities = 130/266 (48%), Positives = 175/266 (65%), Gaps = 11/266 (4%)
 Frame = +3

Query: 3    ADRSKNDLTQYPVFPWIIADYTSETIDFTKPETFRDLSKPMGALNPDRLEKLKERF---- 170
            A R+ NDLTQYPVFPW+IADYTS+ +D   P+T+R+  KPMGA +P+R  +  ER+    
Sbjct: 1940 AGRTYNDLTQYPVFPWVIADYTSKELDLNNPKTYRNFCKPMGAQHPERESQFNERYDLLL 1999

Query: 171  --HEMTDPKFLYGSHYSAPGLVLFYLVRKYP--QYMLCLQNGRFDHPDRMFNSMKDVFNN 338
              ++     F YG+HYS+  +V  YL+R  P     L LQ G+FDH DR+F S++  + +
Sbjct: 2000 GLNDSQQQPFHYGTHYSSAMIVCSYLIRLRPFVDSYLALQGGQFDHADRLFYSIEQAWRS 2059

Query: 339  CLK-NMSDFKELVPEFYDVEAKGDFLVNKFEIDFGSRH-DGTKVNDVALPPWAKS-PEDF 509
              K NM+D +EL+PEF+ +    +  +N    DFGSR  + T +NDV LPPWAK  P  F
Sbjct: 2060 SSKENMADVRELIPEFFYLS---EMFINGNGFDFGSRQKESTPINDVILPPWAKGDPAIF 2116

Query: 510  VCKLRDALESNYVSKHIHLWIDLIFGYKQRGEEAIKAENVFHHVCYEGSVDLECIYDMND 689
            V K R+ALES YVS H+H WIDL+FG KQRG+EA+ A NVFHH+ Y+G++DLE I +  +
Sbjct: 2117 VQKNREALESKYVSAHLHEWIDLVFGCKQRGDEAVAATNVFHHLSYQGAIDLENIENEFE 2176

Query: 690  RHALEVQIMEFGQVPKQLFTKPHVRR 767
              A    I  FGQ PKQ+F KPH +R
Sbjct: 2177 LAAAVGIIHNFGQTPKQVFKKPHPQR 2202


>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
           Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 258 QYMLCLQNGRFDHPDRMFNSMKDV-FNNCLKNMSDFKELVPEFYDVEAKGDFLVNKFEID 434
           QY+LC ++   +   R+ +  K V F      +SDF EL+P  Y++  K D L  K + D
Sbjct: 82  QYILCDKSSLQEKQSRLKSGYKTVIFALSSAPLSDFDELLPAVYEIREK-DVLYKKEDAD 140


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +3

Query: 231 LFYLVRKYPQYMLCLQNGRFDHPDRMFNSMKDVFNNCLKNMSDFKELVPEFYDVEA 398
           ++ + +  P+ +  L +   +H D +     +V NN  KN+    ELV    D+EA
Sbjct: 423 IYQMAKALPKIVTVLDSLTSEHKDLVDKVYTNVLNNHCKNLEKLIELVETTIDLEA 478


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +3

Query: 348 NMSDFKELVPEFYDVEAKGDFLVNKFEIDFGSRHDGTKVNDVALPP--WAKS 497
           ++ DF   V     +  + D  V+   +D G  HDGT ++D+  PP  W  S
Sbjct: 62  DLGDFASFVQHMKHLAKQKD--VDLLLVDTGDLHDGTGLSDLTDPPGSWTDS 111


>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +2

Query: 638 CMLRRFGRFGMHLRYERQTRSGSADYGVWSSSETTVHEAA 757
           C+L   G FG  +R+E          GVWSS  T +   A
Sbjct: 211 CLLVMLG-FGFGVRFESHVAPIGIILGVWSSFTTAIESVA 249


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 456 YHHVGNQSLFRICLPGNPLSLLHHKILE 373
           + ++  QSL+   +PG PL +L + I+E
Sbjct: 571 FQYLEEQSLYNFKIPGFPLCILEYGIVE 598


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +2

Query: 272 PPKWTFRSSRQNVQFNER-CVQQLFE 346
           P +W    S Q+V+FN R C ++L +
Sbjct: 403 PQQWVLEQSTQDVEFNVRPCAEKLLK 428


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,599,627
Number of Sequences: 5004
Number of extensions: 82512
Number of successful extensions: 245
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)