Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16h01f
         (802 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   1.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.3  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   4.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   4.4  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 577 KSIHKC-MCLDT*LDSKASLSLHTKSSGDFAHGGSATSFTLVP 452
           + ++KC +C +T   SK ++ LH K+  D +  GS     + P
Sbjct: 257 EKVYKCTLCHET-FGSKKTMELHIKTHSDSSVVGSPRDSPIEP 298


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -3

Query: 743 QLFRNLTKLHNLHFQSVSVVHI-VNAFQ 663
           Q ++ LT LH LH     V+ I   AFQ
Sbjct: 86  QSWQRLTSLHELHVHGCKVLRIPEGAFQ 113


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 81  DFTKPETFRDLSKPMGALNPDRLEKLKERFH 173
           D    E F  L  P+GA +PD L + +++ +
Sbjct: 311 DGATSEPFPFLMLPLGADDPDSLRRKRQKIN 341


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 382 NSGTNSLKSDIFFKQ 338
           ++G+NS  SD+ FKQ
Sbjct: 147 SNGSNSSNSDVLFKQ 161


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,975
Number of Sequences: 438
Number of extensions: 5269
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)