Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16g23r
         (864 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              26   0.39 
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    24   2.1  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   4.8  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   6.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.3  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 26.2 bits (55), Expect = 0.39
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 38  YISHVH*SNTYGSDNYLNKYTRFVLISSQSVRPVS 142
           Y+SH +  N Y  D    KYTR   +SS +  P++
Sbjct: 666 YVSHANQRNMYKLDLKNMKYTRSADLSSYNCVPIN 700


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +2

Query: 50  VH*SNTYGSDNYLNKYTRF 106
           +H +N Y ++NY N Y  +
Sbjct: 323 IHNNNNYNNNNYNNNYNNY 341


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -3

Query: 433 LLPFLFGGYVFQLYIAYTLYHLSYHPEATW 344
           +L F + G V        ++HL  HP  TW
Sbjct: 156 MLSFAWIGSVVCSLPQTIVFHLETHPNVTW 185


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 771 NCSGLKSIYR 800
           NCSG+ S+YR
Sbjct: 118 NCSGITSVYR 127


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 479 HDRRIPFVDVAWSIISIAFLVW 414
           H+++ P  DVA S   +AFLV+
Sbjct: 342 HEQQKPVADVAVSGPGLAFLVY 363


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 479 HDRRIPFVDVAWSIISIAFLVW 414
           H+++ P  DVA S   +AFLV+
Sbjct: 395 HEQQKPVADVAASGPGLAFLVY 416


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 274,854
Number of Sequences: 438
Number of extensions: 7084
Number of successful extensions: 18
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)