Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16g18f
(769 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 93 3e-20
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p... 30 0.42
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 26 5.2
SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.2
SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyce... 26 6.8
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 26 6.8
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 26 6.8
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces... 26 6.8
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr... 26 6.8
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 25 9.0
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 9.0
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 93.5 bits (222), Expect = 3e-20
Identities = 61/189 (32%), Positives = 95/189 (50%), Gaps = 1/189 (0%)
Frame = +2
Query: 179 DRNAFTFDGEVSITLTTTAVTKQIKLHSEDLNFVADNVTVSGASGDIALANTEPLIFDAN 358
D FT+ G+V +TL + I LH +L + T + G + +E D
Sbjct: 36 DLETFTYGGKVVVTLDVLEDSNSITLHGINLRIL----TAALEWGSQTVWASEVSYGDER 91
Query: 359 YTFVYINLASELQVGVEYTLTISYRGPIREDLNGFYRNYYFEN-GVKKWLGATQMEPTHA 535
+ + V V LT+ + I + GFYR+ Y ++ G K+L TQMEPT A
Sbjct: 92 IVLQFPSTVPANSVAV---LTLPFTARISSGMEGFYRSSYVDSDGNTKYLATTQMEPTSA 148
Query: 536 RKAFPCFDEPGLKATFTLIVDRPQNYKPSLANTKLQTTVTLSNGYVREVFYPTPIMPTYL 715
R+AFPC+DEP LKATFT+ + +NY ++ + T+ +G F T M TYL
Sbjct: 149 RRAFPCWDEPALKATFTIDITAKENY--TILSNMNAVEETVKDGLKTARFAETCRMSTYL 206
Query: 716 VAFMVSQFD 742
+A++V++ +
Sbjct: 207 LAWIVAELE 215
>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 612
Score = 29.9 bits (64), Expect = 0.42
Identities = 18/72 (25%), Positives = 32/72 (44%)
Frame = +2
Query: 512 TQMEPTHARKAFPCFDEPGLKATFTLIVDRPQNYKPSLANTKLQTTVTLSNGYVREVFYP 691
++ + HAR PC D P +K T + ++ P +A+ T NG + +F
Sbjct: 135 SECQAIHARSFIPCQDTPSVKVPCTFKI---RSKLPVIASGIPCGTANFCNGSLEYLFEQ 191
Query: 692 TPIMPTYLVAFM 727
+P+YL +
Sbjct: 192 KNPIPSYLFCIL 203
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -2
Query: 435 PLYEIVSVYSTPTCN 391
PLYEIVSV T CN
Sbjct: 712 PLYEIVSVLLTAVCN 726
>SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 340
Score = 26.2 bits (55), Expect = 5.2
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 179 DRNAFTFDGEVSITLTTTAVTKQIKLHSEDLNFVADN 289
D+N+ T D I L T V KQ+K H+ L+ DN
Sbjct: 138 DKNSTTLDISSGILLNFTVVLKQLK-HALGLHTSVDN 173
>SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 25.8 bits (54), Expect = 6.8
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +1
Query: 64 SNSMSSSEDVWYRHKLQTEHSNSTKSVYNYHYTIL 168
SN + +D W H + E + +T++ N H +L
Sbjct: 213 SNPIDQQKDFWSHHLSKLESTANTETANNIHKLLL 247
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 6.8
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 19 RVAVIIYRYATNICNSNSMSSSEDVW 96
R+ ++Y NIC S SM S VW
Sbjct: 549 RIYSVLYEPERNICISGSMDKSIRVW 574
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 25.8 bits (54), Expect = 6.8
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = -2
Query: 357 FASKISGSVLANAISPLAPLTVTLSATKFRSSECSLICFVTAVVVSVMLTSPS 199
F S++ ++L+N P + S KF++SECSL T +V S++ PS
Sbjct: 148 FVSRVRRALLSN---PEQFFKLQDSLRKFKNSECSLSELQT-IVTSLLAEHPS 196
>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 326
Score = 25.8 bits (54), Expect = 6.8
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +1
Query: 1 ELHSTSRVAVIIYRYATNICNSNSMSSSEDVWYRHKLQTEHSNSTKSVYNYHY 159
E STS+ + + +TN+ SNS+ D W R S S K+ Y +
Sbjct: 30 EYSSTSKFETLGNQSSTNLGFSNSLQDKWDCWKRDLWSIWWSLSRKATRFYRW 82
>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 508
Score = 25.8 bits (54), Expect = 6.8
Identities = 19/80 (23%), Positives = 33/80 (41%)
Frame = -1
Query: 637 LSVSQGGFVVLRSVNNQGESGFKTRLIKTWERLPRVCRLHLCRAQPFFNAVLKVIIPVKS 458
L VS G +V+ ++ + SG+ ++ L C +L Q F A +P K+
Sbjct: 390 LMVSPGAMIVMFAIISSNASGYTKKVTVGVIYLIGYCVGNLIGPQTFKAADAPEYMPAKN 449
Query: 457 IQVLTYRSPIRNSQCILYAN 398
V Y + + + Y N
Sbjct: 450 TMVGCYAATLVTFPALYYVN 469
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -2
Query: 348 KISGSVLANAISPLAPLTVTLSATKFRSSECSLICFVTAVVV 223
K+ S+L SP +T + CSL+CF++ V V
Sbjct: 108 KVVTSLLILLFSPYIAITSMARLLTLITLFCSLVCFISEVYV 149
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +1
Query: 46 ATNICNSNSMSSSEDVWYRHKLQTEHSNSTKS 141
+T+I + S++S+ WY Q+ + N+T S
Sbjct: 3845 STSIMKTTSLNSNSYKWYNSTTQSVYYNATSS 3876
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,130,863
Number of Sequences: 5004
Number of extensions: 65454
Number of successful extensions: 192
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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