Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16g16f
(623 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0378 - 43167805-43169152,43169258-43169326,43169473-431695... 25 1.6
02_02_0444 + 10340927-10341063,10341157-10341241,10341480-103415... 29 3.0
12_02_1153 + 26524232-26524474,26524563-26524694 29 4.0
05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938 28 5.2
05_03_0496 + 14706959-14707020,14707173-14707538,14708070-147082... 28 5.2
01_06_0100 - 26424769-26425545,26425666-26425697,26425778-264258... 28 6.9
>01_07_0378 -
43167805-43169152,43169258-43169326,43169473-43169544,
43169677-43169745,43169979-43171161,43171239-43171365
Length = 955
Score = 25.0 bits (52), Expect(2) = 1.6
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1
Query: 602 FFXXFFFFFFF 570
FF FFFFFFF
Sbjct: 16 FFFFFFFFFFF 26
Score = 23.4 bits (48), Expect(2) = 1.6
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 590 FFFFFFFXXXINILL 546
FFFFFFF + ++L
Sbjct: 18 FFFFFFFFFAVAVVL 32
>02_02_0444 +
10340927-10341063,10341157-10341241,10341480-10341537,
10343738-10345885,10345943-10346388
Length = 957
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -2
Query: 184 DNGGGHDWLSDSTTVG 137
D GGG DWL D TVG
Sbjct: 870 DGGGGGDWLYDGATVG 885
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = -2
Query: 184 DNGGGHDWLSDSTTVGKREIDDFGCENGLGGVGD 83
D GGG DWL D TVG + L G GD
Sbjct: 830 DEGGGGDWLYDGGTVGGLYGGGEAVDGVLDGGGD 863
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -2
Query: 184 DNGGGHDWLSDSTTVGKREIDDFGCENGLGGVGD 83
D GGG WL D TVG + GL G G+
Sbjct: 460 DEGGGGGWLYDGATVGGLDEGGGVVGGGLDGGGE 493
Score = 27.9 bits (59), Expect = 6.9
Identities = 27/79 (34%), Positives = 31/79 (39%)
Frame = -2
Query: 331 GDNNGVGFDFIGLVNNDGLRNDSSISSWLVHVHNDLNERSGLAWCDWSNDNGGGHDWLSD 152
GD G G D G V GL ++ WL G D GGG WL D
Sbjct: 588 GDVVGGGLDGGGEVLGGGL-DEGGGGGWLYDGATVGGLDGGGDVVGGGLDGGGG--WLYD 644
Query: 151 STTVGKREIDDFGCENGLG 95
TVG +D+ GC G G
Sbjct: 645 GATVG--GLDEGGCVEGGG 661
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -2
Query: 184 DNGGGHDWLSDSTTVGKREIDDFGCENGLGGVGD 83
D GGG WL D TVG + GL G G+
Sbjct: 128 DEGGGGGWLYDGATVGGLDGGGDVVGGGLDGGGE 161
>12_02_1153 + 26524232-26524474,26524563-26524694
Length = 124
Score = 28.7 bits (61), Expect = 4.0
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Frame = -2
Query: 352 GAFFSLFGDNNGVGFDFIGLVNN-DGLRNDSSISSWLVHVHNDLNERSGLAWCDWSNDNG 176
GA + GD +G G +GL + G R + S S ER LAW ++ +G
Sbjct: 2 GAAIVVSGDESGGGSS-LGLGGSITGTRENRSTQSG-----RGRWERRRLAWAAGASGSG 55
Query: 175 GGHDWLSDSTTVGKREIDDFG---CENGLGGVGD 83
G D D+ G + DD G C + G+GD
Sbjct: 56 GSRD--DDNDVSGGDDDDDGGGGDCNDDAVGIGD 87
>05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938
Length = 331
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -1
Query: 623 FXXXXFXFFXXFFFFFFFXXXINILLC 543
F F FF FFFFFFF + C
Sbjct: 65 FFFFFFFFFFFFFFFFFFFFFFDRASC 91
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -1
Query: 623 FXXXXFXFFXXFFFFFFF 570
F F FF FFFFFFF
Sbjct: 62 FFFFFFFFFFFFFFFFFF 79
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -1
Query: 623 FXXXXFXFFXXFFFFFFF 570
F F FF FFFFFFF
Sbjct: 63 FFFFFFFFFFFFFFFFFF 80
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -1
Query: 623 FXXXXFXFFXXFFFFFFF 570
F F FF FFFFFFF
Sbjct: 64 FFFFFFFFFFFFFFFFFF 81
>05_03_0496 +
14706959-14707020,14707173-14707538,14708070-14708209,
14708319-14708566,14708814-14708946,14709096-14709159,
14709284-14709380,14709505-14709607,14709702-14709838,
14710063-14710152,14710240-14710401
Length = 533
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -1
Query: 623 FXXXXFXFFXXFFFFFFFXXXINILLC 543
F F FF FFFFFFF + C
Sbjct: 88 FFFFFFFFFFFFFFFFFFFFFSGDVYC 114
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -1
Query: 623 FXXXXFXFFXXFFFFFFF 570
F F FF FFFFFFF
Sbjct: 87 FFFFFFFFFFFFFFFFFF 104
>01_06_0100 -
26424769-26425545,26425666-26425697,26425778-26425894,
26426067-26426118,26426229-26426281,26426883-26427585
Length = 577
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = -2
Query: 181 NGGGHD---WLSDSTTVGKREIDDFGCENGLGGVGDS 80
N G +D W++D VG +DD G ++ +GD+
Sbjct: 541 NPGDYDDEGWITDEDMVGGIALDDLGLDSSSSDIGDA 577
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,560,560
Number of Sequences: 37544
Number of extensions: 243583
Number of successful extensions: 972
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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