Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16g09r
(887 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC150260-1|AAI50261.1| 584|Homo sapiens spastin protein. 34 0.60
AJ246003-1|CAB60208.1| 616|Homo sapiens spastin protein protein. 34 0.60
AJ246001-1|CAB60141.1| 616|Homo sapiens spastin protein protein. 34 0.60
AB029006-1|BAA83035.1| 584|Homo sapiens KIAA1083 protein protein. 34 0.60
AK000972-1|BAA91449.1| 194|Homo sapiens protein ( Homo sapiens ... 33 1.4
AL049563-3|CAI43017.1| 973|Homo sapiens transient receptor pote... 32 2.4
AF054568-1|AAF00002.1| 973|Homo sapiens transient receptor pote... 32 2.4
BC014591-1|AAH14591.1| 165|Homo sapiens chromosome 20 open read... 31 7.4
AL035460-4|CAB82247.1| 165|Homo sapiens chromosome 20 open read... 31 7.4
AK129653-1|BAC85208.1| 254|Homo sapiens protein ( Homo sapiens ... 31 7.4
AK125874-1|BAC86330.1| 243|Homo sapiens protein ( Homo sapiens ... 30 9.8
>BC150260-1|AAI50261.1| 584|Homo sapiens spastin protein.
Length = 584
Score = 34.3 bits (75), Expect = 0.60
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = -1
Query: 881 RGRGAGDGGATQVGPPRRTWCCASCCPPYTGP*PQVCSP 765
RG+ G GGA+ PPR C + PP GP P SP
Sbjct: 7 RGKKKGSGGASNPVPPRPPPPCLAPAPPAAGPAPPPESP 45
>AJ246003-1|CAB60208.1| 616|Homo sapiens spastin protein protein.
Length = 616
Score = 34.3 bits (75), Expect = 0.60
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = -1
Query: 881 RGRGAGDGGATQVGPPRRTWCCASCCPPYTGP*PQVCSP 765
RG+ G GGA+ PPR C + PP GP P SP
Sbjct: 7 RGKKKGSGGASNPVPPRPPPPCLAPAPPAAGPAPPPESP 45
>AJ246001-1|CAB60141.1| 616|Homo sapiens spastin protein protein.
Length = 616
Score = 34.3 bits (75), Expect = 0.60
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = -1
Query: 881 RGRGAGDGGATQVGPPRRTWCCASCCPPYTGP*PQVCSP 765
RG+ G GGA+ PPR C + PP GP P SP
Sbjct: 7 RGKKKGSGGASNPVPPRPPPPCLAPAPPAAGPAPPPESP 45
>AB029006-1|BAA83035.1| 584|Homo sapiens KIAA1083 protein protein.
Length = 584
Score = 34.3 bits (75), Expect = 0.60
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = -1
Query: 881 RGRGAGDGGATQVGPPRRTWCCASCCPPYTGP*PQVCSP 765
RG+ G GGA+ PPR C + PP GP P SP
Sbjct: 7 RGKKKGSGGASNPVPPRPPPPCLAPAPPAAGPAPPPESP 45
>AK000972-1|BAA91449.1| 194|Homo sapiens protein ( Homo sapiens
cDNA FLJ10110 fis, clone HEMBA1002688. ).
Length = 194
Score = 33.1 bits (72), Expect = 1.4
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -1
Query: 872 GAGDGGATQVGPPRRTWCCASC 807
G GD GA + GPPR W ASC
Sbjct: 120 GGGDDGAGRAGPPRGDWGVASC 141
>AL049563-3|CAI43017.1| 973|Homo sapiens transient receptor
potential cation channel, subfamily C, member 5 protein.
Length = 973
Score = 32.3 bits (70), Expect = 2.4
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 152 VGCNQKCCSTVSLVPAAPRGCGSQGVTRGHTTTMRPF 262
+GC +K C L+ PR G+QG ++ +++ R F
Sbjct: 801 LGCKKKTCHGPPLIRTMPRSSGAQGKSKAESSSKRSF 837
>AF054568-1|AAF00002.1| 973|Homo sapiens transient receptor
potential calcium channel 5 protein.
Length = 973
Score = 32.3 bits (70), Expect = 2.4
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 152 VGCNQKCCSTVSLVPAAPRGCGSQGVTRGHTTTMRPF 262
+GC +K C L+ PR G+QG ++ +++ R F
Sbjct: 801 LGCKKKTCHGPPLIRTMPRSSGAQGKSKAESSSKRSF 837
>BC014591-1|AAH14591.1| 165|Homo sapiens chromosome 20 open reading
frame 141 protein.
Length = 165
Score = 30.7 bits (66), Expect = 7.4
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -1
Query: 887 PVRGRGAGDGGATQVGPPRRTW 822
P RG GAG+G + V PP TW
Sbjct: 19 PPRGLGAGEGSGSPVRPPVSTW 40
>AL035460-4|CAB82247.1| 165|Homo sapiens chromosome 20 open reading
frame 141 protein.
Length = 165
Score = 30.7 bits (66), Expect = 7.4
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -1
Query: 887 PVRGRGAGDGGATQVGPPRRTW 822
P RG GAG+G + V PP TW
Sbjct: 19 PPRGLGAGEGSGSPVRPPVSTW 40
>AK129653-1|BAC85208.1| 254|Homo sapiens protein ( Homo sapiens
cDNA FLJ26142 fis, clone TST04526. ).
Length = 254
Score = 30.7 bits (66), Expect = 7.4
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -1
Query: 887 PVRGRGAGDGGATQVGPPRRTW 822
P RG GAG+G + V PP TW
Sbjct: 19 PPRGLGAGEGSGSPVRPPVSTW 40
>AK125874-1|BAC86330.1| 243|Homo sapiens protein ( Homo sapiens
cDNA FLJ43886 fis, clone TESTI4009283. ).
Length = 243
Score = 30.3 bits (65), Expect = 9.8
Identities = 18/46 (39%), Positives = 19/46 (41%)
Frame = -2
Query: 319 HNDDGFDQQRESPAPHRLPERTHRGGVTPRNPL*PTPSRRRGNQRY 182
HN DG QR SP P R G TP NP RR R+
Sbjct: 149 HNLDGAAGQRHSPLPRRGSRAEWPGRGTPHNPDGAAGQRRSSPPRW 194
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,585,470
Number of Sequences: 237096
Number of extensions: 2204912
Number of successful extensions: 6711
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6708
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11381686510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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