Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16g04f
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0637 - 12491706-12492575,12492580-12492657                       29   3.5  
01_06_1239 + 35652053-35654050                                         29   3.5  
11_08_0022 + 27733247-27733935,27735722-27735981,27736213-277364...    29   4.6  

>02_02_0637 - 12491706-12492575,12492580-12492657
          Length = 315

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 387 ISYNNMLAYYALAGLFLKSLHIF 319
           ++YN ML  Y  AGLF +++H+F
Sbjct: 234 VTYNTMLRVYGDAGLFGEAVHLF 256


>01_06_1239 + 35652053-35654050
          Length = 665

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 387 ISYNNMLAYYALAGLFLKSLHIF 319
           ++YN ML  Y  AGLF +++H+F
Sbjct: 342 VTYNTMLRVYGDAGLFGEAVHLF 364


>11_08_0022 +
           27733247-27733935,27735722-27735981,27736213-27736404,
           27737695-27738686
          Length = 710

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +3

Query: 93  KKTSVDILFRRDF-KLTTSKNFHINRCAAGIIHKSVH 200
           +KTSV I  +++  K+T +K+  I + A G+++K  H
Sbjct: 414 EKTSVKIFTKQELDKITNNKSNKIGKGAFGVVYKGTH 450


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,189,637
Number of Sequences: 37544
Number of extensions: 211917
Number of successful extensions: 314
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)