Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16f22r
(807 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 233 2e-62
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce... 36 0.007
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 28 1.4
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 28 1.8
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S... 27 4.1
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 26 5.5
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 26 7.2
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 9.6
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 25 9.6
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 25 9.6
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 25 9.6
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 25 9.6
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 25 9.6
SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1 |Sc... 25 9.6
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 25 9.6
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 233 bits (570), Expect = 2e-62
Identities = 119/242 (49%), Positives = 148/242 (61%)
Frame = -2
Query: 791 LEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEK 612
LE+LLP ++GNVGFVFT DL EVR+ ++ N + APARP AIAPL V +PA NTG+ P K
Sbjct: 73 LERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTGMEPGK 132
Query: 611 TSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYD 432
TSFFQAL IPTKI++GTIEI +DVH++ KVG SEATLLNMLNISPF+YG+ V +YD
Sbjct: 133 TSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDVLTIYD 192
Query: 431 SGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXXX 252
G +F+PEILD+ EDL + + + A+SL YPTI S HS+ N +KNL+
Sbjct: 193 QGNVFSPEILDVSEEDLIGHLLSAASIITAISLGANYPTILSVMHSVVNAYKNLVAVSLA 252
Query: 251 XXXXXXXXXXIKEFIKDPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGL 72
K F+ DPS F SD+DMGFGL
Sbjct: 253 TEYTFEGTEQTKAFLADPSAF--VVAAAPAAAAGGEAEAPAAEAAAEEEEESDEDMGFGL 310
Query: 71 FD 66
FD
Sbjct: 311 FD 312
>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 35.9 bits (79), Expect = 0.007
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 16/130 (12%)
Frame = -2
Query: 791 LEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAP-ARPGAIAPLSVVIPA----HNTG 627
+ KL + G VG +FT EV E+ VQ AR GA+AP + VIPA G
Sbjct: 89 VSKLTKLLHGAVGLLFTNSKPDEVIG-YFESFVQNDFARAGAVAPFTHVIPAGPVYSRAG 147
Query: 626 LGPEKTSFF---------QALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNI 474
P + + L +PT + G + ++ D + G ++ + + LL + I
Sbjct: 148 QIPVEDDILLTHTLEPQVRQLGMPTVLKNGVVTLLADFPLCTEGQQLDSRQTRLLKLFGI 207
Query: 473 --SPFSYGLV 450
+ F GL+
Sbjct: 208 TAAEFKVGLL 217
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 550 MISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAMAP 675
+IS P + L+GI AW E S R + T+ +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 27.9 bits (59), Expect = 1.8
Identities = 20/69 (28%), Positives = 34/69 (49%)
Frame = +3
Query: 204 LNELLDGGSFFKLNLCDSSDGQKVLETIGNGMRG*SNSWVTNSQRKSSYISNSSLELGTE 383
L L+ G S+ SSDG + + + ++ + SWV ++R S IS S E+ +
Sbjct: 82 LRRLIQGNSYRIFGTGKSSDGLATYKLLLDELKSLTKSWVM-AKRFSDAISGSDSEVFED 140
Query: 384 IFWFDVQNF 410
FD++ F
Sbjct: 141 ---FDIEAF 146
>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 543 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGNDD*QWG 665
IVD NS + R + L ++G+L+ +GV GG + ++G
Sbjct: 101 IVDGGNSHYPDTTRRCEELAKKGILFVGSGVSGGEEGARYG 141
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +3
Query: 225 GSFFKLNLCDSSDGQKVLETIGNGMRG*SNSWVTNSQRKSSYISNSS 365
G FF + CD + G K + N S N K++Y +N S
Sbjct: 405 GKFFSQHSCDLASGNKSAQEGQNQFLSMVESEAKNLMNKTNYSANQS 451
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 25.8 bits (54), Expect = 7.2
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = +1
Query: 616 SGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPR---VNTKPTLPLMCGNSF 786
+G PV + + G++ P AGAW L N L T + +NT P PL G F
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVINT-PHNPL--GKIF 194
Query: 787 S 789
S
Sbjct: 195 S 195
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.4 bits (53), Expect = 9.6
Identities = 14/62 (22%), Positives = 29/62 (46%)
Frame = +3
Query: 201 VLNELLDGGSFFKLNLCDSSDGQKVLETIGNGMRG*SNSWVTNSQRKSSYISNSSLELGT 380
V L D G + +C+ +D ++++T + ++++ KS + N EL T
Sbjct: 1016 VNRRLADAGIASRCEICEINDKNEIVKTRSQRIHSKKKAFLSLVPDKSIGVINRYKELAT 1075
Query: 381 EI 386
E+
Sbjct: 1076 EL 1077
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 9.6
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -2
Query: 95 DDDMGFGLFD 66
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 9.6
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -2
Query: 95 DDDMGFGLFD 66
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 25.4 bits (53), Expect = 9.6
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -2
Query: 95 DDDMGFGLFD 66
D+DMGFGLFD
Sbjct: 100 DEDMGFGLFD 109
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 9.6
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -2
Query: 95 DDDMGFGLFD 66
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 25.4 bits (53), Expect = 9.6
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -2
Query: 95 DDDMGFGLFD 66
D+DMGFGLFD
Sbjct: 100 DEDMGFGLFD 109
>SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 215
Score = 25.4 bits (53), Expect = 9.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 543 IVDDFNSTL*NLGRDRKSL 599
+VD NSTL N+GR R S+
Sbjct: 98 VVDSVNSTLNNIGRGRLSV 116
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 9.6
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -2
Query: 95 DDDMGFGLFD 66
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,036,155
Number of Sequences: 5004
Number of extensions: 58734
Number of successful extensions: 171
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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