Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16f18r
         (911 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    30   0.52 
SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|c...    26   6.5  
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    26   8.5  

>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 19/56 (33%), Positives = 30/56 (53%)
 Frame = -1

Query: 623  WRDVWRNEASPSNMITVPPNCPPGQVYINGQCRDIWFKSIFGLSEKREPTPFANFP 456
            WRD    E+S + ++++  N P  + Y+N Q  DIW  S   L + +E    A+FP
Sbjct: 1081 WRD---RESSVNTLVSLLSNVPVTE-YLN-QLEDIWNMSFRTLDDIKESVREASFP 1131


>SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -1

Query: 149 LVNQTKMNTSFDTTSFVQSPATSRL-LENWS*NITKTEN*KNEL 21
           ++NQT+ N +F    F+Q   TS   + N +  +  T N  NEL
Sbjct: 31  IINQTQHNIAFQNIYFIQLNTTSIFSVANQTAVVNNTSNLLNEL 74


>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 452 NDEHVSSDTVEARNIISIPNQ 390
           +D  + SD   ARNI+SIP+Q
Sbjct: 383 SDPSIVSDPRTARNIVSIPHQ 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,764,064
Number of Sequences: 5004
Number of extensions: 82387
Number of successful extensions: 185
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)