Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16f18f
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    30   0.44 
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    27   4.1  
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    26   7.1  
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    25   9.4  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    25   9.4  

>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 19/56 (33%), Positives = 30/56 (53%)
 Frame = +2

Query: 386  WRDVWRNEASPSNMITVPPNCPPGQVYINGQCRDIWFKSIFGLSEKREPTPFANFP 553
            WRD    E+S + ++++  N P  + Y+N Q  DIW  S   L + +E    A+FP
Sbjct: 1081 WRD---RESSVNTLVSLLSNVPVTE-YLN-QLEDIWNMSFRTLDDIKESVREASFP 1131


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = -2

Query: 210 TSRHCPLIHCCPPGQLGGTVITFLESKSNKSGLAFDSVTTPSNRTISFNI 61
           T+  CP+ H   P  L G   + L S    S ++  ++ +P N     N+
Sbjct: 373 TASFCPVKHGVSPPSLAGNQPSPLSSPLTNSNVSPSTICSPDNNVTFVNL 422


>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 557 NDEHVSSDTVEARNIISIPNQ 619
           +D  + SD   ARNI+SIP+Q
Sbjct: 383 SDPSIVSDPRTARNIVSIPHQ 403


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 446 CPPGQVYINGQCRDIWFKSIFGLSEKREPTPFANFPGNDEHVSSD 580
           CPP  VYING      + SIF  S + E +   +F    + +S +
Sbjct: 200 CPPPMVYINGN-----YSSIFNQSFRTEISIMNDFGQCSQPISEE 239



 Score = 25.4 bits (53), Expect = 9.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 353 CPPGQVYINGQWRDVW 400
           CPP  VYING +  ++
Sbjct: 200 CPPPMVYINGNYSSIF 215


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 218 NAATPSNMITVPPNCLP 268
           N  TP+  ITVPPN +P
Sbjct: 288 NPYTPAPSITVPPNYIP 304


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,292,261
Number of Sequences: 5004
Number of extensions: 73173
Number of successful extensions: 182
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)