Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16f18f
(793 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0499 - 3959843-3960058,3960158-3960235,3960315-3960389,396... 30 1.8
04_03_1003 - 21631188-21631274,21631939-21632043,21632171-216322... 30 2.4
08_02_0519 - 18097509-18097726,18097803-18097967,18098095-180983... 29 3.2
12_01_0498 - 3955300-3955317,3955399-3955503,3955600-3955677,395... 29 4.2
11_06_0350 + 22573760-22575262 29 4.2
08_01_0343 - 3025577-3025810,3026428-3026505,3026630-3026748,302... 29 4.2
02_04_0203 - 20888010-20888162,20888242-20888469,20888969-208890... 29 4.2
11_04_0424 - 17508609-17508669,17509132-17509450,17509675-175097... 28 7.4
07_03_1076 + 23779941-23779988,23780102-23780191,23781580-237816... 28 7.4
10_05_0116 + 9314166-9314249,9314280-9315380 28 9.8
04_04_0272 - 24073753-24074802 28 9.8
>12_01_0499 -
3959843-3960058,3960158-3960235,3960315-3960389,
3960590-3960676,3960764-3960831,3961854-3961941,
3962041-3962141,3962223-3962343,3962647-3962778,
3962880-3962969
Length = 351
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +2
Query: 68 KEIVLLLGVVTLSNARPDLLDFDSRNVITVP--PNCPGGQQW 187
KEIV L G TL ARP+ + P PGGQ W
Sbjct: 200 KEIVALSGAHTLGRARPERSGWGKPETKYTENGPGAPGGQSW 241
>04_03_1003 -
21631188-21631274,21631939-21632043,21632171-21632248,
21632337-21632411,21632908-21632994,21633091-21633158,
21633478-21633565,21633684-21633784,21633831-21633990,
21635088-21635246,21635351-21635527
Length = 394
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +2
Query: 68 KEIVLLLGVVTLSNARPDLLDFDSRNVITVP--PNCPGGQQW 187
KEIV+L G TL +RP+ + P PGGQ W
Sbjct: 251 KEIVVLSGAHTLGRSRPERSGWGKPETKYTKNGPGAPGGQSW 292
>08_02_0519 -
18097509-18097726,18097803-18097967,18098095-18098305,
18099151-18099419,18100915-18101017
Length = 321
Score = 29.5 bits (63), Expect = 3.2
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = -1
Query: 406 VTPYVTPLSVDVH-LTGGAIRRNRDHVRRGSFITPYVTTLSVDVHLTGEAIRRNRDHVRR 230
VTPYV+ +S H TGGA R +D ++ + V +L + + I R+++ + R
Sbjct: 156 VTPYVSSVSFAGHTYTGGAARNKKDAEQKAA--RAAVKSLLATNYTSMAKIVRSKEKLIR 213
Query: 229 CSSVTPYVTTLSVNP 185
S + Y + NP
Sbjct: 214 AISPSGYNKGIDSNP 228
>12_01_0498 -
3955300-3955317,3955399-3955503,3955600-3955677,
3955764-3955838,3956339-3956425,3956507-3956574,
3957604-3957691,3957794-3957894,3957967-3958087,
3958434-3958556,3958687-3958752
Length = 309
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +2
Query: 68 KEIVLLLGVVTLSNARPDLLDFDSRNVITVP--PNCPGGQQW 187
KEIV L G TL +RP+ + P PGGQ W
Sbjct: 189 KEIVALSGAHTLGRSRPERSGWGKPETKYTKNGPGAPGGQSW 230
>11_06_0350 + 22573760-22575262
Length = 500
Score = 29.1 bits (62), Expect = 4.2
Identities = 39/155 (25%), Positives = 56/155 (36%), Gaps = 14/155 (9%)
Frame = +2
Query: 119 DLLDFDSRNVIT-VPPNCPGGQQWINGQCRDVWRNAA--TPSNMI--TVPPNCLPGQVYI 283
D+ +F R + T PPN WI+G C+ + A M+ + PN I
Sbjct: 63 DVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLI 122
Query: 284 NGQCRDVWRNEA-----SPSNMITVPPNCPPGQVYINGQWRD--VWRNEASPSNMIT--V 436
+G C+ W A + PN V I G R+ + R E M+ +
Sbjct: 123 DGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGL 182
Query: 437 PPNCPPGQVYINGQCRDIWFKSIFGLSEKREPTPF 541
PN I G C+ F F L K + F
Sbjct: 183 KPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGF 217
>08_01_0343 - 3025577-3025810,3026428-3026505,3026630-3026748,
3027566-3027645,3028034-3028107,3028536-3028620,
3028704-3028789,3028968-3029038,3029126-3029207,
3029490-3029531,3029552-3029584,3029699-3029794,
3030163-3030414,3030970-3031149,3032079-3032119,
3032341-3032470,3032504-3032606,3032686-3032773,
3033151-3033304,3033688-3033739,3033815-3033894,
3034478-3034789,3034886-3034955,3035033-3035100,
3035405-3035678,3036408-3036580,3037036-3037128,
3037228-3037443
Length = 1121
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 491 WFKSIFGLSEKREPTPFANFPGNDEHVSSDTVEARNIIS 607
W KS+F L E P AN NDE S V + ++S
Sbjct: 1052 WLKSLFSLFNNVEDQPLANEAINDEDGFSPNVAQKAMLS 1090
>02_04_0203 -
20888010-20888162,20888242-20888469,20888969-20889073,
20889148-20889225,20889308-20889382,20890037-20890123,
20890216-20890283,20890396-20890483,20890583-20890683,
20890793-20890913,20891008-20891169,20891271-20891441
Length = 478
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +2
Query: 68 KEIVLLLGVVTLSNARPDLLDFDSRNVITVP--PNCPGGQQW 187
KEIV L G TL +RPD + P PGGQ W
Sbjct: 237 KEIVALSGAHTLGRSRPDRSGWGKPETKYTKDGPGEPGGQSW 278
>11_04_0424 -
17508609-17508669,17509132-17509450,17509675-17509786,
17510649-17510714,17510861-17511008,17511662-17511904,
17513226-17513426,17513745-17513883,17514532-17514889
Length = 548
Score = 28.3 bits (60), Expect = 7.4
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -1
Query: 256 RRNRDHVRRCSSVTPYVTTL 197
R +DHV+RC+++ P V T+
Sbjct: 521 RSRKDHVKRCNAILPVVATV 540
>07_03_1076 +
23779941-23779988,23780102-23780191,23781580-23781663,
23781792-23782010,23782873-23782974,23783809-23784207,
23784332-23784561,23784749-23784842,23784931-23785113,
23785254-23785351,23785831-23786143
Length = 619
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +2
Query: 299 DVWRNEASPSNMITVPPNCPPGQVYINGQWRDVWRNEASPSNMITV 436
+ W+N P N I + P + NG RD+ + PS M+++
Sbjct: 254 ETWKNRRRP-NPIYIRDTLPEEAIRQNGSSRDINNEQEEPSAMVSL 298
>10_05_0116 + 9314166-9314249,9314280-9315380
Length = 394
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -1
Query: 220 VTPYVTTLSVNPLLSSRTIR-GHCYNISGVEIQ 125
+T Y +SV+ + S TI GH Y++S VEIQ
Sbjct: 262 ITAYKIDVSVSSVASPSTITAGHMYSLSIVEIQ 294
>04_04_0272 - 24073753-24074802
Length = 349
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 435 FLLIAPPVKCTSMDNVVISGSRAFLDYLK 521
F LI PP+ T D VVI+ S A + +++
Sbjct: 303 FWLIVPPITRTGTDRVVIAESEAMVAFVR 331
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,408,800
Number of Sequences: 37544
Number of extensions: 555746
Number of successful extensions: 1235
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1228
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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