Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16f18f
(793 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int... 36 0.033
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr... 35 0.058
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 33 0.18
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 33 0.18
U23517-4|AAB93335.1| 128|Caenorhabditis elegans Hypothetical pr... 30 1.7
AL132952-20|CAL90889.1| 79|Caenorhabditis elegans Hypothetical... 30 2.2
AL132952-9|CAB61144.2| 61|Caenorhabditis elegans Hypothetical ... 29 2.9
AF125459-8|AAD12840.2| 317|Caenorhabditis elegans Serpentine re... 29 2.9
Z50070-9|CAA90403.1| 90|Caenorhabditis elegans Hypothetical pr... 29 3.8
U00065-1|AAK68287.1| 400|Caenorhabditis elegans Hypothetical pr... 29 3.8
AC006776-7|AAF60623.1| 361|Caenorhabditis elegans Serpentine re... 29 3.8
U00065-2|AAL27237.1| 672|Caenorhabditis elegans Prion-like-(q/n... 28 6.7
Z68299-6|CAA92610.2| 412|Caenorhabditis elegans Hypothetical pr... 28 8.8
Z32679-8|CAM33498.1| 119|Caenorhabditis elegans Hypothetical pr... 28 8.8
U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical pr... 28 8.8
>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
interacting proteinprotein 1 protein.
Length = 2153
Score = 35.9 bits (79), Expect = 0.033
Identities = 27/114 (23%), Positives = 39/114 (34%), Gaps = 1/114 (0%)
Frame = +2
Query: 173 GGQQWINGQCRDVWRNAATPS-NMITVPPNCLPGQVYINGQCRDVWRNEASPSNMITVPP 349
GG+Q+ G C V A + + P + +Y+ CR +W + T P
Sbjct: 923 GGEQYCEGNCASVTSTLANANVTVYACVPTYVCNSLYVYDSCRTLWYDRDITGCCCTNGP 982
Query: 350 NCPPGQVYINGQWRDVWRNEASPSNMITVPPNCPPGQVYINGQCRDIWFKSIFG 511
NC QV R N + P CP G + + F FG
Sbjct: 983 NCNLNQVVP----RPPINNPGRRRPRVEYPITCPAGLIVDGFNQTPMEFSVCFG 1032
>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
F57F4.4 protein.
Length = 2090
Score = 35.1 bits (77), Expect = 0.058
Identities = 27/114 (23%), Positives = 39/114 (34%), Gaps = 1/114 (0%)
Frame = +2
Query: 173 GGQQWINGQCRDVWRNAATPS-NMITVPPNCLPGQVYINGQCRDVWRNEASPSNMITVPP 349
GG+Q+ G C V A + + P + +Y+ CR +W + T P
Sbjct: 923 GGEQYCEGNCASVTSTLANANVTVYACVPAYVCNSLYVYDSCRTLWYDRDITGCCCTNGP 982
Query: 350 NCPPGQVYINGQWRDVWRNEASPSNMITVPPNCPPGQVYINGQCRDIWFKSIFG 511
NC QV R N + P CP G + + F FG
Sbjct: 983 NCNLNQVVP----RPPINNPGRRRPRVEYPITCPAGLIVDGFNQTPMEFSVCFG 1032
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 33.5 bits (73), Expect = 0.18
Identities = 31/110 (28%), Positives = 38/110 (34%), Gaps = 8/110 (7%)
Frame = +2
Query: 167 CPGGQQWINGQCRDVWRNAATPSNMITVPPNCLPGQVYINGQCRDVWRNEASPSNMITVP 346
CP NG+C V + P ++T PP P QV I R P IT P
Sbjct: 321 CPAQTDLSNGECISVPAPTSQPVQVMTPPPTLPPVQVPIQ-TLPPQTRPPQLPPVQITQP 379
Query: 347 PNCPPGQVYINGQWRDVWRNEAS--------PSNMITVPPNCPPGQVYIN 472
P P Q R A+ P + T PP P + IN
Sbjct: 380 PIQTPVQPIFFQTTRPPMPTYATTPATTQFIPKQIYTTPPQMPKNSIKIN 429
Score = 32.3 bits (70), Expect = 0.41
Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +2
Query: 245 TVPPNCL-PGQVYI-NGQCRDVWRNEASPSNMITVPPNCPPGQVYINGQWRDVWRNEASP 418
+V P C+ P Q + NG+C V + P ++T PP PP QV I R P
Sbjct: 314 SVIPVCVCPAQTDLSNGECISVPAPTSQPVQVMTPPPTLPPVQVPIQ-TLPPQTRPPQLP 372
Query: 419 SNMITVPPNCPPGQ 460
IT PP P Q
Sbjct: 373 PVQITQPPIQTPVQ 386
Score = 29.5 bits (63), Expect = 2.9
Identities = 28/110 (25%), Positives = 37/110 (33%), Gaps = 5/110 (4%)
Frame = +2
Query: 167 CPGGQQWIN-GQCRDVWRNAATPSNMITVPPNCLPGQVYINGQCRDVWRNEASPSNMITV 343
CP + I+ GQC + P C G +G CR A N + +
Sbjct: 814 CPQDKSEISQGQCVTPRKLEVVPGASCNANTVCTKGSTCESGLCRCQPGYIAVSGNCVAL 873
Query: 344 PPNCPPGQVYINGQWRDVWRNEA----SPSNMITVPPNCPPGQVYINGQC 481
P + P I E S + T CPPGQ+ N QC
Sbjct: 874 PMSTTPKMRVIAKPLESCENGETCEGGSNCDYDTGICMCPPGQIVFNVQC 923
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 33.5 bits (73), Expect = 0.18
Identities = 31/110 (28%), Positives = 38/110 (34%), Gaps = 8/110 (7%)
Frame = +2
Query: 167 CPGGQQWINGQCRDVWRNAATPSNMITVPPNCLPGQVYINGQCRDVWRNEASPSNMITVP 346
CP NG+C V + P ++T PP P QV I R P IT P
Sbjct: 418 CPAQTDLSNGECISVPAPTSQPVQVMTPPPTLPPVQVPIQ-TLPPQTRPPQLPPVQITQP 476
Query: 347 PNCPPGQVYINGQWRDVWRNEAS--------PSNMITVPPNCPPGQVYIN 472
P P Q R A+ P + T PP P + IN
Sbjct: 477 PIQTPVQPIFFQTTRPPMPTYATTPATTQFIPKQIYTTPPQMPKNSIKIN 526
Score = 32.3 bits (70), Expect = 0.41
Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +2
Query: 245 TVPPNCL-PGQVYI-NGQCRDVWRNEASPSNMITVPPNCPPGQVYINGQWRDVWRNEASP 418
+V P C+ P Q + NG+C V + P ++T PP PP QV I R P
Sbjct: 411 SVIPVCVCPAQTDLSNGECISVPAPTSQPVQVMTPPPTLPPVQVPIQ-TLPPQTRPPQLP 469
Query: 419 SNMITVPPNCPPGQ 460
IT PP P Q
Sbjct: 470 PVQITQPPIQTPVQ 483
Score = 29.5 bits (63), Expect = 2.9
Identities = 28/110 (25%), Positives = 37/110 (33%), Gaps = 5/110 (4%)
Frame = +2
Query: 167 CPGGQQWIN-GQCRDVWRNAATPSNMITVPPNCLPGQVYINGQCRDVWRNEASPSNMITV 343
CP + I+ GQC + P C G +G CR A N + +
Sbjct: 911 CPQDKSEISQGQCVTPRKLEVVPGASCNANTVCTKGSTCESGLCRCQPGYIAVSGNCVAL 970
Query: 344 PPNCPPGQVYINGQWRDVWRNEA----SPSNMITVPPNCPPGQVYINGQC 481
P + P I E S + T CPPGQ+ N QC
Sbjct: 971 PMSTTPKMRVIAKPLESCENGETCEGGSNCDYDTGICMCPPGQIVFNVQC 1020
>U23517-4|AAB93335.1| 128|Caenorhabditis elegans Hypothetical
protein D1022.2 protein.
Length = 128
Score = 30.3 bits (65), Expect = 1.7
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Frame = +2
Query: 62 MLKEIVLLLGVV--TLSNARPDL-LDFDSRNVITVPPNCPGGQQWINGQCRDVWRNAATP 232
ML LL+ V T++ A P L ++ D V P C GG Q + C + N A P
Sbjct: 15 MLLVFSLLISFVAATIAQASPQLQVECDIVPVTECPVTCGGGWQLMKYACVEKTDNCACP 74
Query: 233 SNMITVPPNCLP 268
N I N P
Sbjct: 75 KNPIKYQCNNRP 86
>AL132952-20|CAL90889.1| 79|Caenorhabditis elegans Hypothetical
protein Y51H4A.32 protein.
Length = 79
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +2
Query: 74 IVLLLGVVTLSNARPDLLD--FDSRNVITVPPNCPGGQQWINGQCRD 208
++LL+ + TL+ ++PD + F RN CP Q ++GQC D
Sbjct: 23 LLLLICLATLTFSQPDENNNGFIQRNFFPCTVYCPDNQLCVHGQCVD 69
>AL132952-9|CAB61144.2| 61|Caenorhabditis elegans Hypothetical
protein Y51H4A.10 protein.
Length = 61
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +2
Query: 74 IVLLLGVVTLSNARPDLLD--FDSRNVITVPPNCPGGQQWINGQCRD 208
++LL+ + T++ ++PD + F RN CP Q ++GQC D
Sbjct: 5 LLLLICLATMAYSQPDENNNGFIQRNFFPCTVYCPDNQLCVHGQCVD 51
>AF125459-8|AAD12840.2| 317|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 21 protein.
Length = 317
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = -1
Query: 346 RNRDHVRRGSFITPYVTTLSVDVHLTGEAIRRNR---DHVRRCSSVTPYVTTLSV 191
+N++H R SF Y T V+++ + A+ +R D C V PY T S+
Sbjct: 57 KNKEHYRNNSFYILYTTEAVVNIYTSCVAVFFSRLFSDVTPLCPLVAPYFFTPSI 111
>Z50070-9|CAA90403.1| 90|Caenorhabditis elegans Hypothetical
protein F43G6.10 protein.
Length = 90
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 347 PNCPPGQVYINGQWRDVWRNEASPSNMITVPPNCPPGQ 460
P PP QV G + R+ A P+ + +PP PPGQ
Sbjct: 20 PPLPPAQVERIGD--PIVRDPAEPAQPMFLPPRQPPGQ 55
>U00065-1|AAK68287.1| 400|Caenorhabditis elegans Hypothetical
protein D1044.7 protein.
Length = 400
Score = 29.1 bits (62), Expect = 3.8
Identities = 21/49 (42%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Frame = +2
Query: 167 CPGGQQWINGQCRDVWRNAATP------SNMITVPPNCLPGQVYINGQC 295
C GG +G CR N AT S+ TV P C QVY NGQC
Sbjct: 265 CVGGAMCNSGTCRCT--NGATAMYGYCISSQSTVNP-CNSNQVYYNGQC 310
>AC006776-7|AAF60623.1| 361|Caenorhabditis elegans Serpentine
receptor, class w protein100 protein.
Length = 361
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/67 (25%), Positives = 36/67 (53%)
Frame = +3
Query: 558 MMSTYHLIRLKQETLYLYRTNVLLVIDLTL*AIAVKNLTDK*SSVKSYFPLTDQPRSISV 737
+M+T+H+ L Q+++ TNV+L+ +++V ++ +++ +F + D S V
Sbjct: 35 LMNTFHIFILSQKSMRTSSTNVILI------SLSVCDIAGGLTTIYKHFLMVDAENSECV 88
Query: 738 VSTDSLK 758
ST K
Sbjct: 89 TSTSLWK 95
>U00065-2|AAL27237.1| 672|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 25
protein.
Length = 672
Score = 28.3 bits (60), Expect = 6.7
Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Frame = +2
Query: 104 SNARPDLLDFDSRNVITVPPN--CPGGQQWINGQCRDVWRNAATPSNMITVPPNCLPGQV 277
SN+ P + S V+T N C G NG C + SN CL GQ
Sbjct: 111 SNSSPQVSA--SGQVVTCSTNTQCASGYTCNNGACCPNTNSNTCSSNGNN---GCLAGQT 165
Query: 278 YINGQC 295
+NGQC
Sbjct: 166 MVNGQC 171
Score = 27.9 bits (59), Expect = 8.8
Identities = 31/119 (26%), Positives = 44/119 (36%), Gaps = 6/119 (5%)
Frame = +2
Query: 143 NVITVPPNCPGGQQWINGQ------CRDVWRNAATPSNMITVPPNCLPGQVYINGQCRDV 304
N + V +C QQ +N C + + + +N + + C V I QC
Sbjct: 350 NTVQVGGSCSFSQQCLNNAVCTNNICVSTFCSVSCSTNQVCISNQCY-NYVSIGSQCVGS 408
Query: 305 WRNEASPSNMITVPPNCPPGQVYINGQWRDVWRNEASPSNMITVPPNCPPGQVYINGQC 481
+ S S I+ CP G NG V + +N C P QV IN QC
Sbjct: 409 -QQCLSNSQCISSICQCPQGTQQSNG----VCTGNNNNNNQ------CQPNQVLINNQC 456
>Z68299-6|CAA92610.2| 412|Caenorhabditis elegans Hypothetical
protein T04B2.3a protein.
Length = 412
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 105 QTPDPTYWISTPEML 149
QTPDP WIS PE +
Sbjct: 34 QTPDPEKWISAPEFV 48
>Z32679-8|CAM33498.1| 119|Caenorhabditis elegans Hypothetical
protein C05B5.11 protein.
Length = 119
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +2
Query: 167 CPGGQQWINGQCRDVWRNAATPSNMITVPPNCLPGQVYINGQCRDV 304
CP G Q I+G+C+ A P C PG ING C +
Sbjct: 74 CPTGYQCIDGKCKTKRHFLAPP-----CVAECPPGTRCINGVCTGI 114
>U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical
protein F59A6.3 protein.
Length = 786
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -2
Query: 129 SNKSGLAFDSVTTPSNRTISFNIVDVSFSVIVASTN 22
+N S + DS T+PS T+S+N + S + I S N
Sbjct: 681 TNSSSGSSDSSTSPSTFTVSYNNTNSSITCIEPSLN 716
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,713,906
Number of Sequences: 27780
Number of extensions: 449788
Number of successful extensions: 1298
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1283
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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