Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16f12r
         (434 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0055 + 21977546-21978061,21978144-21978162,21978168-219784...    33   0.10 
11_08_0032 - 27807489-27807497,27807641-27807684,27808046-278081...    29   2.2  
03_06_0095 - 31612293-31612607,31612982-31613119,31613229-316133...    27   8.7  

>05_05_0055 +
           21977546-21978061,21978144-21978162,21978168-21978486,
           21978779-21978799,21980780-21980857,21981116-21981359
          Length = 398

 Score = 33.1 bits (72), Expect = 0.10
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +3

Query: 294 AHHQQHRKGNKNHRF--EHFVIYTNHSTKACLINRRDHCRDCL 416
           AH   HRKG   +R   +  +  TNH+    L +R + CRD L
Sbjct: 333 AHDSFHRKGQAKYRAWTDEHIAPTNHTNSLTLSHRSEACRDAL 375


>11_08_0032 - 27807489-27807497,27807641-27807684,27808046-27808168,
            27810770-27810983,27811382-27811530,27811719-27812618,
            27812964-27814659
          Length = 1044

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 240  RWRIVPIVDEHLRLGADRAHHQQHRKGNKNHRFEHF 347
            RW   P    +  +G +R  H + RKG K +  E+F
Sbjct: 1009 RWERSPAHQAYPLMGPERKEHSKERKGRKRNGEENF 1044


>03_06_0095 -
           31612293-31612607,31612982-31613119,31613229-31613315,
           31613410-31613469,31613563-31613662,31613757-31614163,
           31614335-31614805,31614910-31615032,31615396-31615479,
           31615609-31615678,31615767-31615846
          Length = 644

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 200 KCRLGVHCRTRHMPLAHSTHSRRALEAWR*SSTPSATPQ 316
           +C  GV+C+    PL H   S     ++  SST + +PQ
Sbjct: 313 RCMAGVYCKLADPPLVHHGSSSSPTSSF--SSTSAISPQ 349


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,238,624
Number of Sequences: 37544
Number of extensions: 155074
Number of successful extensions: 324
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)