Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16f12f
         (477 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    25   5.9  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    25   7.9  

>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 132 QQHRKGNKNHRFEHFVIYTNHSTK 61
           ++H  GN  +  + F+ Y NH  K
Sbjct: 459 KKHASGNNGYMLKDFINYLNHQDK 482


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = -2

Query: 434 SRFSLYIVNTFKYDFY*SRKYLNRNKIILTIS*VPLDIFFLCLQYKNLETV 282
           S  SL + N    +FY      +RN++I  +  +P    FL   Y  L  +
Sbjct: 454 SMVSLELTNEMALEFYDLNTKASRNRLIKALCTIPRTSSFLVPYYVRLARI 504


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,673,957
Number of Sequences: 5004
Number of extensions: 27500
Number of successful extensions: 46
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)