Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16f12f
         (477 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92822-7|CAH10786.1|  601|Caenorhabditis elegans Hypothetical pr...    31   0.57 
Z83244-9|CAH10804.1|  601|Caenorhabditis elegans Hypothetical pr...    31   0.57 
Z83244-1|CAB05827.2|  634|Caenorhabditis elegans Hypothetical pr...    31   0.57 
AF145376-1|AAD39815.1|  634|Caenorhabditis elegans LIT-1 protein.      31   0.57 
U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily as...    29   1.3  
U40941-4|AAA81709.1|  771|Caenorhabditis elegans Hypothetical pr...    29   1.7  
U40941-3|AAM51502.1|  730|Caenorhabditis elegans Hypothetical pr...    29   1.7  
U41023-2|AAA82341.1|  335|Caenorhabditis elegans Sphingomyelin s...    27   9.2  
AC024843-5|AAK70666.3|  740|Caenorhabditis elegans Hypothetical ...    27   9.2  

>Z92822-7|CAH10786.1|  601|Caenorhabditis elegans Hypothetical
           protein W06F12.1d protein.
          Length = 601

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = -1

Query: 183 VPIVDEHLRLGADRAHHQQHRKGNKNHRFEHFVIYTNHS 67
           +PI+ EH +L A  AHHQ H++ + + +++     T+H+
Sbjct: 55  IPIIPEH-QLAAVAAHHQHHQQLHPSVQYQLVAAATHHN 92


>Z83244-9|CAH10804.1|  601|Caenorhabditis elegans Hypothetical
           protein W06F12.1d protein.
          Length = 601

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = -1

Query: 183 VPIVDEHLRLGADRAHHQQHRKGNKNHRFEHFVIYTNHS 67
           +PI+ EH +L A  AHHQ H++ + + +++     T+H+
Sbjct: 55  IPIIPEH-QLAAVAAHHQHHQQLHPSVQYQLVAAATHHN 92


>Z83244-1|CAB05827.2|  634|Caenorhabditis elegans Hypothetical
           protein W06F12.1a protein.
          Length = 634

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = -1

Query: 183 VPIVDEHLRLGADRAHHQQHRKGNKNHRFEHFVIYTNHS 67
           +PI+ EH +L A  AHHQ H++ + + +++     T+H+
Sbjct: 88  IPIIPEH-QLAAVAAHHQHHQQLHPSVQYQLVAAATHHN 125


>AF145376-1|AAD39815.1|  634|Caenorhabditis elegans LIT-1 protein.
          Length = 634

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = -1

Query: 183 VPIVDEHLRLGADRAHHQQHRKGNKNHRFEHFVIYTNHS 67
           +PI+ EH +L A  AHHQ H++ + + +++     T+H+
Sbjct: 88  IPIIPEH-QLAAVAAHHQHHQQLHPSVQYQLVAAATHHN 125


>U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 77 protein.
          Length = 1004

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -1

Query: 69  STKACLINRRDHCRDC 22
           ST+  +INRR HCRDC
Sbjct: 788 STEFNIINRRHHCRDC 803


>U40941-4|AAA81709.1|  771|Caenorhabditis elegans Hypothetical
           protein F35C8.7a protein.
          Length = 771

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 101 RWFLLPLRCC*WC 139
           +WFL+ L+CC WC
Sbjct: 602 KWFLMCLKCCFWC 614


>U40941-3|AAM51502.1|  730|Caenorhabditis elegans Hypothetical
           protein F35C8.7b protein.
          Length = 730

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 101 RWFLLPLRCC*WC 139
           +WFL+ L+CC WC
Sbjct: 561 KWFLMCLKCCFWC 573


>U41023-2|AAA82341.1|  335|Caenorhabditis elegans Sphingomyelin
           synthase protein 2 protein.
          Length = 335

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 469 LLIIYWLKNHIFQDFH 422
           +LI YWL +H+F  +H
Sbjct: 258 VLIAYWLTSHVFWSYH 273


>AC024843-5|AAK70666.3|  740|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.8 protein.
          Length = 740

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
 Frame = -1

Query: 171 DEHLRLGA---DRAHHQQHRKGNKNHR 100
           +EH+R      DR HH+ HR+G  + R
Sbjct: 175 EEHVRARGEKHDRHHHKDHRRGRSHER 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,365,925
Number of Sequences: 27780
Number of extensions: 161022
Number of successful extensions: 395
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)