Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16f12f
         (477 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY340960-1|AAQ16586.1|   78|Apis mellifera apisimin precursor pr...    24   0.96 
AY055108-1|AAL15544.1|   78|Apis mellifera apisimin precursor pr...    24   0.96 
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    22   2.9  

>AY340960-1|AAQ16586.1|   78|Apis mellifera apisimin precursor
           protein.
          Length = 78

 Score = 23.8 bits (49), Expect = 0.96
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 88  KMFKSVVLITFAVLLMVCSISAKPQVLV 171
           K+   VVL  F V ++V  +SAK  + V
Sbjct: 3   KIVAVVVLAAFCVAMLVSDVSAKTSISV 30


>AY055108-1|AAL15544.1|   78|Apis mellifera apisimin precursor
           protein.
          Length = 78

 Score = 23.8 bits (49), Expect = 0.96
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 88  KMFKSVVLITFAVLLMVCSISAKPQVLV 171
           K+   VVL  F V ++V  +SAK  + V
Sbjct: 3   KIVAVVVLAAFCVAMLVSDVSAKTSISV 30


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 159 RLGADRAHHQQHRKGNKNHR 100
           +LG  R H  + R GNK +R
Sbjct: 37  KLGPQRIHTVRTRGGNKKYR 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,464
Number of Sequences: 438
Number of extensions: 2125
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)