Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16f11r
(862 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 295 4e-81
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 48 2e-06
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po... 28 1.5
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 28 2.0
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 26 6.0
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 26 6.0
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 26 7.9
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 26 7.9
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 26 7.9
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 295 bits (725), Expect = 4e-81
Identities = 142/207 (68%), Positives = 174/207 (84%)
Frame = -2
Query: 843 HSRLLERAAKMXDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGI 664
HSRLLERAAKM K GGGSLTALPVIETQ GDVSAYIPTNVISITDGQIFLE+ELF+KGI
Sbjct: 330 HSRLLERAAKMSPKHGGGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLESELFFKGI 389
Query: 663 RPAINVGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDAATQQLLNRG 484
RPAINVGLSVSRVGSAAQ KAMKQVAG +KL LAQYREVA+FAQFGSDLDA T+ L+RG
Sbjct: 390 RPAINVGLSVSRVGSAAQVKAMKQVAGQIKLFLAQYREVASFAQFGSDLDAGTRATLDRG 449
Query: 483 MRLTELLKQGQYVPMAIEEQVAIIYCGVRGHLDKLDPSKITAFEKEFTQHIKTSHQGLLS 304
+RLTELLKQ QY P+A+EEQV +IYCGV+G+LDK+ ++ FE +F ++++S ++
Sbjct: 450 LRLTELLKQPQYSPLAVEEQVPLIYCGVKGYLDKIPVDRVVEFEHKFIPYLRSSGAEIME 509
Query: 303 TIAKDGQITPESDASLKKIVTDFLATF 223
I K+G ++ ++ SLK ++ +FL++F
Sbjct: 510 AIRKEGVLSKTTEDSLKAVIKEFLSSF 536
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 47.6 bits (108), Expect = 2e-06
Identities = 28/81 (34%), Positives = 46/81 (56%)
Frame = -2
Query: 840 SRLLERAAKMXDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIR 661
S + ERA ++ + GS+T +P++ D++ IP IT+GQIF++ +L I
Sbjct: 310 STIYERAGRVEGR--NGSITQIPILTMPNDDITHPIPDLTGYITEGQIFVDRQLHNNAIY 367
Query: 660 PAINVGLSVSRVGSAAQTKAM 598
P INV S+SR+ +A + M
Sbjct: 368 PPINVLPSLSRLMKSAIGEGM 388
>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 596
Score = 28.3 bits (60), Expect = 1.5
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Frame = -2
Query: 660 PAINVGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDAATQQLLNRG- 484
P N+GL V T+ + G + E Y + FA+ +D+D +QL+ G
Sbjct: 337 PHTNIGLMSKLV-----TQIEEPFGGELTFENPFYTTLQCFAENSADMDDNLRQLIKSGD 391
Query: 483 -MRLTELLKQGQYVPMAIEEQVAI 415
++T+L + + E +A+
Sbjct: 392 TEKMTDLFSKSRLYRYFFETSIAV 415
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 27.9 bits (59), Expect = 2.0
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -2
Query: 387 DKLDPSKITAFEKEFTQHIKTSHQGLLSTIAKDGQITPESDASLKKIVTDFL 232
DK+DP AF+K T ++ TS + KD T S L I+ +FL
Sbjct: 1424 DKVDPVFKDAFQKLITPNLLTSQ--FFDVLTKDALYTNGSCWELSVIILNFL 1473
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 26.2 bits (55), Expect = 6.0
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Frame = -2
Query: 390 LDKLDPSKITAFEKEFTQHIKTS------HQGLLSTIAKDGQITPESDASLKKIVT 241
L++LDP KIT + E I + QG S++ K + P+ A VT
Sbjct: 534 LEELDPPKITTIDGESPSSISSRLPSSNLEQGSSSSVTKSPESMPDPSAKASSPVT 589
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 26.2 bits (55), Expect = 6.0
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 554 VRSQLLPSSVLTWMPLHSSCSTEECVLLSSSSKDN 450
+R P L W PLH + + LL+S SKDN
Sbjct: 216 LRRHTKPIMALCWQPLHLAPDSGP-YLLASGSKDN 249
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1428
Score = 25.8 bits (54), Expect = 7.9
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 304 GEKTLVASFDVLSEFLLEGSDFGGVQLVEVTADTAVNDGDLFLNS 438
G+ + S+ + +FLL DF G +L+ T +D +L +NS
Sbjct: 1379 GDLKHMTSYLIRQDFLLN-EDFVGTELIGTTDSYDYSDENLIINS 1422
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.8 bits (54), Expect = 7.9
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3
Query: 39 YQHSIQPI*MLYYYSSH 89
Y HS++ + ++YYY SH
Sbjct: 803 YMHSLRSLFVVYYYESH 819
>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 756
Score = 25.8 bits (54), Expect = 7.9
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 400 DTAVNDGDLFLNSHGHILSLLEELSKTHSSVEQLLCSGIQVRTEL 534
D ++ G+ + + I+SLL+ELS S E S +Q+ +E+
Sbjct: 65 DAKLSMGEKMDDLNSSIVSLLQELSTLQSVAENTQSSIVQMTSEI 109
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,439,304
Number of Sequences: 5004
Number of extensions: 67919
Number of successful extensions: 208
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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