Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16f10f
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar...    29   0.97 
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.2  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    27   3.0  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    27   3.9  
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S...    26   6.8  
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc...    25   9.0  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   9.0  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    25   9.0  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    25   9.0  

>SPAC15E1.03 |rpl36a||60S ribosomal protein
           L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +1

Query: 151 REDRLQLSRGPATRPPRHSEVRLQDSLMTTLARQSAPYPRRLVGLRYTHFIWG 309
           R DR Q   G  T+P  H + ++   ++  L   S  Y  +LV  R  HF  G
Sbjct: 42  RYDRKQSGFGGQTKPVFHKKAKVTKKVVLRLECVSCKYKNQLVLKRCKHFELG 94


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 20/66 (30%), Positives = 33/66 (50%)
 Frame = -2

Query: 618 CCSTRTSVLPRSPAAFSVLGHQTGRATSATNEMFFNSALCCTHNYFMAFIQKERVLYTDI 439
           C +T +S L R  A++ V G  +   +S+ +  F N  L  T+NYFM  ++   V+    
Sbjct: 281 CNATTSSSLFRQIASYGVYG--SFHFSSSESGSFAN--LIGTNNYFMTDVKSSSVVIVQS 336

Query: 438 *IRCSV 421
              CS+
Sbjct: 337 ETSCSI 342


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 742 PCMSAVGGRARPGETRRVHPSDTLVP 665
           PC   VG   RP E  + +PS   VP
Sbjct: 62  PCTQPVGNSGRPVEAFKTYPSTPAVP 87


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 19/62 (30%), Positives = 27/62 (43%)
 Frame = +1

Query: 106 GLEQMIRSTCSTFGLREDRLQLSRGPATRPPRHSEVRLQDSLMTTLARQSAPYPRRLVGL 285
           G  + +R  CST+ LR+D   LS     R   +      +    T+ R+  P  RRLV  
Sbjct: 736 GDHKQLRPGCSTYALRQDPFNLSISMFERLVEND----MEYTRLTMQRRMHPQIRRLVSS 791

Query: 286 RY 291
            Y
Sbjct: 792 VY 793


>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
           Sad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -3

Query: 491 IIILWLLFRKREFYTRIFKSD 429
           ++I+ LL + +EFY+R F SD
Sbjct: 182 LLIITLLHKGQEFYSRSFSSD 202


>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 677 VGGVDSARLSWSSPPSHCTH 736
           +GG+D A   W    +HC+H
Sbjct: 194 IGGIDGAIKIWDLRNNHCSH 213


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -2

Query: 597  VLPRSPAAFSVLGHQTGRATSATNEMFFNSALCCTHNYFMA 475
            V+P   A     GH   RA S    M  NS L   +NY+++
Sbjct: 1149 VIPFIIAGSDADGHPADRAYSPQEIMNTNSTLVIDYNYYLS 1189


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 382 ENNMRQYSFPIHLSACLMWMVLI 314
           E+N+ ++ F +H   CL+W  L+
Sbjct: 185 EDNLPEWYFEVHSDFCLVWNDLV 207


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 22/77 (28%), Positives = 34/77 (44%)
 Frame = +3

Query: 453 KLSLSE*KP*NNYVYSRERC*RTSHSLQMLPSQSGDPTR*TRLVSVAAPTSGCCSITRSR 632
           K+ LSE       V S     + SHS  +  S +      TR+V ++AP S   S   S 
Sbjct: 498 KMYLSEKASAPERVISLNPVNQKSHSPAIKSSSTLRKASKTRIVDLSAPNSAVFSKNASG 557

Query: 633 GPRSQGGNVHSGTSVSE 683
           G  S   ++ +G++  E
Sbjct: 558 GDTSSNVSLLNGSASEE 574


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,187,356
Number of Sequences: 5004
Number of extensions: 62662
Number of successful extensions: 132
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)