Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16f10f
         (769 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0702 - 26934736-26935551,26937494-26937538,26938484-26938594     30   2.3  
01_01_0849 - 6623963-6624519,6627371-6628173,6628390-6628901           29   3.1  
02_02_0248 - 8267332-8268276,8268338-8269288                           29   4.1  

>03_05_0702 - 26934736-26935551,26937494-26937538,26938484-26938594
          Length = 323

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -3

Query: 767 RNDYPXGGPLYECSGRAGSTRRDAPSP 687
           R D P  G  +EC GRAG   RD P+P
Sbjct: 122 RGDGPPPGNCFEC-GRAGHWARDCPNP 147


>01_01_0849 - 6623963-6624519,6627371-6628173,6628390-6628901
          Length = 623

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +3

Query: 543 PSQSGDPTR*TRLVSVAAPTSGCCSITRSRGPRSQGGNVHSGTSVSEGWTR 695
           P  +  P     L SV+ P + CCS+T        GG+  +  + S G T+
Sbjct: 92  PVLTAKPATSISLRSVSPPAAACCSLTSIENVADHGGDHLTAGACSSGTTQ 142


>02_02_0248 - 8267332-8268276,8268338-8269288
          Length = 631

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/27 (55%), Positives = 15/27 (55%)
 Frame = +1

Query: 208 EVRLQDSLMTTLARQSAPYPRRLVGLR 288
           E  LQD LM       APYPRRL  LR
Sbjct: 229 EPELQDVLMELFVDFPAPYPRRLAYLR 255


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,191,849
Number of Sequences: 37544
Number of extensions: 502689
Number of successful extensions: 1415
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1414
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)