Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16f04r
(877 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub... 224 1e-59
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ... 29 0.87
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 28 2.0
SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces ... 28 2.0
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 27 2.7
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4... 27 2.7
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 3.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 3.5
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po... 27 3.5
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 27 4.6
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 23 5.4
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 26 6.1
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 6.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 6.1
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 26 6.1
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 26 6.1
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 26 8.1
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 26 8.1
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p... 26 8.1
>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 224 bits (547), Expect = 1e-59
Identities = 108/201 (53%), Positives = 141/201 (70%), Gaps = 3/201 (1%)
Frame = -3
Query: 818 KYRADGGVTFALYGDGAANQGQLFEAYNMSKLWDLPCVFVCENNGYGMGTSVDRSSASTE 639
KY TFALYGDGA+NQGQ FEA+NM+KLW LP +F CENN YGMGTS +RSSA TE
Sbjct: 199 KYLEKPTTTFALYGDGASNQGQAFEAFNMAKLWGLPVIFACENNKYGMGTSAERSSAMTE 258
Query: 638 YYTRGDYVPGVWVDGMDVLATREAARFAIEYCNAGKGPLVMEMETYRYSGHSMSDPGTSY 459
+Y RG Y+PG+ V+GMDVLA +A++FA +Y PL+ME TYRY GHSMSDPGT+Y
Sbjct: 259 FYKRGQYIPGLLVNGMDVLAVLQASKFAKKYTVENSQPLLMEFVTYRYGGHSMSDPGTTY 318
Query: 458 RTRDEVQEVRQTRDPITSFKEKILNHELVTPDQLKDIDAKVRKEVDEATKQSKTEP-EVG 282
R+R+EVQ+VR RDPI K+ I+ + ++LK+I+ ++R VDE + ++ P
Sbjct: 319 RSREEVQKVRAARDPIEGLKKHIMEWGVANANELKNIEKRIRGMVDEEVRIAEESPFPDP 378
Query: 281 IEE-LSADIYYKNLEP-FVRG 225
IEE L +D+Y EP + RG
Sbjct: 379 IEESLFSDVYVAGTEPAYARG 399
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 877 GNGIVGAQVPFGSWSG 830
GNGIVGAQ+P G+ G
Sbjct: 180 GNGIVGAQIPLGAGIG 195
>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 29.1 bits (62), Expect = 0.87
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -3
Query: 302 KTEPEVGIEELSADIYYKNLEPFVRGIHPAAPLKHLEVQPRN 177
K EP+VGI+E A Y+ L + +H + + H +++P N
Sbjct: 102 KIEPDVGIDEDVAQFYFAQLMEGISFMH-SKGVAHRDLKPEN 142
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = -1
Query: 877 GNGIVGAQVPFGSWSGLRPTSTAPTAESRSLCTETEPPTRVNSSKPTTCLNYGTCLASS 701
GNG++ V S S +S++ + S S T T P + +SS ++ + + +SS
Sbjct: 119 GNGVLQTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSS 177
>SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 245
Score = 27.9 bits (59), Expect = 2.0
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = -1
Query: 823 PTSTAPTAESRSLCTETEPPTR-VNSSKPTT--CLNYGTCLASS 701
PT T+P S S ++T+ TR NS PTT +Y T +++S
Sbjct: 168 PTQTSPGKPSTSESSQTDTSTRPANSQTPTTTRASSYTTLVSTS 211
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/35 (28%), Positives = 15/35 (42%)
Frame = -1
Query: 814 TAPTAESRSLCTETEPPTRVNSSKPTTCLNYGTCL 710
+ P + LC E P R+ T C+ G C+
Sbjct: 28 SCPVVRTGKLCIEVNPTDRIAFISETLCIGCGICV 62
>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 684
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 32 AVTKINNFYQRYCHINATVKKNN 100
A+ KINN+ R+ H+N+ KK+N
Sbjct: 126 AIVKINNYNSRFSHVNS--KKSN 146
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 3.5
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -1
Query: 871 GIVGAQVPFGSWSGLRPTSTAPTAESRSLCTETEPPTRVNSS 746
G + +P S S TS PT S + T T PPT +S+
Sbjct: 326 GTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSST 367
Score = 26.6 bits (56), Expect = 4.6
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = -1
Query: 820 TSTAPTAESRSLCTETEPPTRVNSSKPTTCLNYGT 716
TS PT S + T T PPT +SS P T N T
Sbjct: 397 TSIPPTGNSTTPVTPTVPPT--SSSTPLTTTNCTT 429
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -1
Query: 853 VPFGSWSGLRPTSTAPTAESRSLCTETEPPTRVNSS 746
+P S S TS PT S + T T PPT +S+
Sbjct: 278 LPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSST 313
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 3.5
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -1
Query: 871 GIVGAQVPFGSWSGLRPTSTAPTAESRSLCTETEPP--TRVNSSKPT 737
G+ G P G + LR T + E++S ++ PP + S++PT
Sbjct: 445 GLPGLAAPIGRKNTLRRTPAKSSEEAKSTTNDSSPPKDSSSTSTQPT 491
>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 27.1 bits (57), Expect = 3.5
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -3
Query: 689 NGYGMGTSVDRSSASTEYYTRGDYVPGV 606
NG+ GT + + A EYY++ D + +
Sbjct: 82 NGFVNGTQISSTPAEREYYSKSDEIKNI 109
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 26.6 bits (56), Expect = 4.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 829 LRPTSTAPTAESRSLCTETEPPTRVNSSKPT 737
L PTS P + + TE+ PP ++SS T
Sbjct: 400 LAPTSNVPAYSTPARPTESPPPPPISSSSTT 430
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
EF hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 22.6 bits (46), Expect(2) = 5.4
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -2
Query: 189 PTSQPLKPQYRLYLHHTQ 136
P +QPLKPQ +H+++
Sbjct: 251 PAAQPLKPQKTGQIHNSK 268
Score = 21.8 bits (44), Expect(2) = 5.4
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -2
Query: 252 QELGTLRPWHPPGCPAQTP*GPTSQPLKPQ 163
Q+ G + P P G P GP + ++PQ
Sbjct: 215 QQTGVVMPPQPTGYLQAQPTGPFASFVQPQ 244
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -3
Query: 767 ANQGQLFEAYNMSKLWDLPCVFVCENNGYGMGTSVDRS 654
+N G+L + +S + D+ V C N + S DR+
Sbjct: 475 SNNGELIGEFTLSNITDVEKVCACSNKNIQISFSSDRT 512
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 848 VWELEWPSPHKYRADGGVTFALYGDGA 768
+W L+ P P+K G V FA + D A
Sbjct: 274 LWTLKTPEPYKSTGTGFVLFASHEDAA 300
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 425 SASPPAPRLSSDTTCRGPTSNDQSNGTSPSPSP 523
SA PP P S+ +T R P S S P+P
Sbjct: 359 SAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAP 391
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/66 (24%), Positives = 33/66 (50%)
Frame = -3
Query: 449 DEVQEVRQTRDPITSFKEKILNHELVTPDQLKDIDAKVRKEVDEATKQSKTEPEVGIEEL 270
+E + +R+ P+ S + +L+ +T Q D D + +VD+ QS T+P +
Sbjct: 838 EERRPIRRLWWPLRSIRRSLLSQ--LTGHQ-GDYDENIHNDVDKDMNQSSTQPRDPDADH 894
Query: 269 SADIYY 252
+ +Y+
Sbjct: 895 PSSLYH 900
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 8 KSKVTYCVAVTKINNFYQRY 67
+ K CV +TK+ NFY+ Y
Sbjct: 71 QKKFADCVLLTKVGNFYEMY 90
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 528 SFGDGDGDVPLLWSFDVGPRHVVSDERRGAGGEAD 424
+ GDG DV ++ D+G +V +E R A AD
Sbjct: 1009 AIGDGANDVAMIQKADIGV-GIVGEEGRAAAMSAD 1042
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.8 bits (54), Expect = 8.1
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = -1
Query: 835 SGLRPTSTAPTAESRSLCTETEPP-TRVNSS----KPTTCLNYGT 716
+ + T+T P S + T T PP T VNS+ PTT +N T
Sbjct: 88 TSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTHVNTTT 132
>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 646 LADERSTLVPMPYPLFSQTKTQGKSHSLDM 735
L + ST++ YPL T Q SHSL +
Sbjct: 9 LLESFSTVILSIYPLAKSTNQQSHSHSLSL 38
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,364,928
Number of Sequences: 5004
Number of extensions: 67374
Number of successful extensions: 247
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -