Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16f04r
         (877 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   1.6  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   4.9  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   6.5  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   6.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   6.5  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   6.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.5  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   6.5  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 268 DNSSIPTSGSVFDCLVASSTSLRTL 342
           DN   P  G+VF  L++  T LRTL
Sbjct: 513 DNRRRPNPGTVFARLLSVLTELRTL 537


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -3

Query: 269 SADIYYKNLEPFVRGIHPAAPLKHLEVQ 186
           S  +YY N+EPF++  +    +++  +Q
Sbjct: 273 SHSLYYVNMEPFMKSQYEENNIEYEGIQ 300


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +3

Query: 147 VNIIYIEVLVVARLDLKVFERGSRVDA 227
           ++++Y+E+ +  R  L+   R SR++A
Sbjct: 212 MSLVYLEIYLATRRRLRERARQSRINA 238


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +3

Query: 147 VNIIYIEVLVVARLDLKVFERGSRVDA 227
           ++++Y+E+ +  R  L+   R SR++A
Sbjct: 212 MSLVYLEIYLATRRRLRERARQSRINA 238


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 817 LWGEGHSSSQTGPAH 861
           + G  H+ S+TGP+H
Sbjct: 179 IMGNEHTYSETGPSH 193


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +3

Query: 147 VNIIYIEVLVVARLDLKVFERGSRVDA 227
           ++++Y+E+ +  R  L+   R SR++A
Sbjct: 212 MSLVYLEIYLATRRRLRERARQSRINA 238


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 434 PPAPRLSSDTTCRGPTSNDQSNGTS 508
           PPAPRL++  + +  + N   + T+
Sbjct: 213 PPAPRLTNSNSIKHESDNSDYSHTT 237


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 269 SADIYYKNLEPFVRGIHPAAPLKHLEVQ 186
           S  +YY N +PF++  + A  +++  VQ
Sbjct: 273 SRSLYYVNTKPFMKSEYGANNVQYQGVQ 300


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 240,538
Number of Sequences: 438
Number of extensions: 5688
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)