Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16f04f
(765 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub... 184 1e-47
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.55
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 28 1.7
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S... 28 1.7
SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces pomb... 27 2.2
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 27 3.9
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 26 5.1
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc... 25 9.0
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ... 25 9.0
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo... 25 9.0
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 9.0
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 9.0
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 9.0
SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p... 25 9.0
>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 184 bits (448), Expect = 1e-47
Identities = 84/152 (55%), Positives = 109/152 (71%)
Frame = +1
Query: 310 HKLDQGPATSATLTSEDALKLYEQLTILRRIETASGNLYKEKIIRGFCHLYSGQEAVAVG 489
+K+D P+T +T + L LYE++ +RR+E A LYK K IRGFCHL GQEAVA G
Sbjct: 62 YKIDV-PSTEIEVTKGELLGLYEKMVTIRRLELACDALYKAKKIRGFCHLSIGQEAVAAG 120
Query: 490 MRAAMRDADSVITAYRCHGWTYLMGVSVLGVLSELTGRRTGCSRGKGGSMHLYGRNFYGG 669
+ A+ DS+IT+YRCHG+ Y G+S+ ++ EL GR+ G S+GKGGSMH++ +NFYGG
Sbjct: 121 IEGAITLDDSIITSYRCHGFAYTRGLSIRSIIGELMGRQCGASKGKGGSMHIFAKNFYGG 180
Query: 670 NGIVGAQVPLGAGVAFAHKYRADGGVTFALYG 765
NGIVGAQ+PLGAG+ FA KY TFALYG
Sbjct: 181 NGIVGAQIPLGAGIGFAQKYLEKPTTTFALYG 212
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.5 bits (63), Expect = 0.55
Identities = 23/78 (29%), Positives = 33/78 (42%)
Frame = -2
Query: 707 PAPNGTCAPTIPLPP*KLRPYKCMEPPLPREQPVLRPVSSESTPSTLTPMR*VHP*QRYA 528
P P + AP +P P L P + P + PV P S PS TP V A
Sbjct: 1209 PVPPPSTAPPVPTPSAGLPP---VPVPTAKAPPV--PAPSSEAPSVSTPRSSVPSPHSNA 1263
Query: 527 VITESASRIAALIPTATA 474
+ ++S +A+ P T+
Sbjct: 1264 SPSPTSSSMASAAPARTS 1281
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = -1
Query: 639 HGTSLAPGATGPAPRQLRE--HPQHTNAHEISPS 544
H S AP ++ P L HP HTNA +++ S
Sbjct: 83 HSNSAAPASSSPTSATLSTAAHPVHTNAAQVAGS 116
>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
Vma6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 756 SERDSAVGAVLVGEGHSSSQRDLRTNNPVATI 661
S+ +S VL HS+SQ DLR + V+T+
Sbjct: 402 SQNESIESNVLFPGNHSNSQTDLRNGDAVSTV 433
>SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 376
Score = 27.5 bits (58), Expect = 2.2
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -2
Query: 446 PRMIFSLYRFPDAVSILRNIV 384
PR++F + PDAV IL+N++
Sbjct: 332 PRIVFHIQITPDAVEILKNVL 352
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 26.6 bits (56), Expect = 3.9
Identities = 27/98 (27%), Positives = 42/98 (42%)
Frame = -2
Query: 638 MEPPLPREQPVLRPVSSESTPSTLTPMR*VHP*QRYAVITESASRIAALIPTATASCPEY 459
+E P+ +PV P +E TP TL+P+ + + E + A AS Y
Sbjct: 41 LEDPVNPIRPVYTPTRTEITPVTLSPIPITPVREFQPYLHEISQEYARYSKQKRASLRRY 100
Query: 458 R*QKPRMIFSLYRFPDAVSILRNIVSCSYSLRASSEVS 345
+ ++ S+ S+LR S S LR +SE S
Sbjct: 101 LEKHGKLEGSMKESSINGSLLRR-SSVSTILRPASESS 137
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 26.2 bits (55), Expect = 5.1
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = -2
Query: 731 RYLWAKAT--PAPNGTCAPTIPLPP*KLRPYKCMEPPLPREQPVLRPVSSEST 579
R LW ++T APN +P P K + ++P P +P L + S +T
Sbjct: 574 RKLWPQSTLIQAPNSDDEENVPSPSPKKKVVSPIKPLSPSRRPPLTSLYSGTT 626
>SPAC11E3.06 |map1||MADS-box transcription factor
Map1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 25.4 bits (53), Expect = 9.0
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Frame = -2
Query: 623 PREQPVLRPVSSESTPSTL-TPMR*VHP*QR----YAVITESASRIAALIPTATASCPEY 459
PR++P L P+S + PST+ T R Q+ YA I E S + A++S P+
Sbjct: 312 PRDRPPLIPISRIAVPSTIETEERQYRGNQKIINFYAKIFEPNSGLGTSSEGASSSFPDV 371
Query: 458 R*QKPRMIFSLYRFPD 411
+ Y PD
Sbjct: 372 DPNLAQNGVPYYSLPD 387
>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 25.4 bits (53), Expect = 9.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 280 ATFEIKPYKLHKLDQGPATSATLTSEDALKLYEQ 381
A F+IKP L Q P + L E ++ LY++
Sbjct: 343 AAFDIKPSTLDTQTQLPENTYVLKEETSMVLYDE 376
>SPAC821.05 |||translation initiation factor
eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
Length = 357
Score = 25.4 bits (53), Expect = 9.0
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +1
Query: 307 LHKLDQGPATSATLTSEDALKLYEQ---LT-ILRRIETASGNLYKEKI 438
LH L + P ++TLT+E AL+ E LT E + G Y++ I
Sbjct: 204 LHSLSEPPTPASTLTAEAALEDCESNLPLTETFSNFEVSLGTRYRKNI 251
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -2
Query: 707 PAPNGTCAPTIPLPP*KLRPYKCMEPPLPREQP 609
P P A +IPLPP + PP PR P
Sbjct: 341 PPPRSNAAGSIPLPP---QGRSAPPPPPPRSAP 370
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 448 NHG*SFLYIGFLMRFQSSAISSVVHTA*EHLQ 353
N+G S L I LM + + +V+HTA +H+Q
Sbjct: 147 NYGLSILSIHALMCVECECLLNVIHTA-QHMQ 177
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 448 NHG*SFLYIGFLMRFQSSAISSVVHTA*EHLQ 353
N+G S L I LM + + +V+HTA +H+Q
Sbjct: 147 NYGLSILSIHALMCVECECLLNVIHTA-QHMQ 177
>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 280 ATFEIKPYKLHKLDQGPATSATLTSEDA 363
A F++ P+K+ LD + S LT +DA
Sbjct: 41 APFDVPPFKVESLDVLISQSEQLTKQDA 68
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,039,336
Number of Sequences: 5004
Number of extensions: 62134
Number of successful extensions: 229
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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