Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16f03r
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    27   2.8  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   3.7  
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc...    27   4.8  
SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces pom...    26   8.5  

>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -1

Query: 824 YYCLVLIIIDSSITSFVKLSYLGTIQPLIVSDFVSEFIYTYRFHVSL 684
           Y CL+ ++ID SI + V L+   +   L  S F++    T+ F  S+
Sbjct: 98  YMCLISLLIDLSIWNIVPLNARWSALLLYSSSFMATTFQTHTFTNSI 144


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = -1

Query: 377 DPPLPHRVHVPFAPGYICAY*IVVALCLY*VFVTSCYYCFKFSFCYGFYSFKF 219
           DP    R  +      +C   IV A C+Y VF+    Y     +   FY + F
Sbjct: 319 DPAYAIRTALTRGVRLLCTEPIVQAFCMYLVFINILLYICMVGYPLIFYQYGF 371


>SPAC328.08c |||tubulin specific chaperone cofactor C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 154 IYASDDSDSSLCQR*GANSFHQLRCYHKFNLR 59
           I+ SD +DS++C      S HQ R +H  NLR
Sbjct: 183 IHLSDINDSTICV-----SCHQFRLHHSTNLR 209


>SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 132

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 21  VAGRHYHFLIVLPLRLNLW*HLSWW-KELAPHR*HNEESLSS 143
           +  +  H LI+  L + LW  L+W+  ELA  R +N+  +SS
Sbjct: 40  IGTKSIHCLILFFLAICLWLSLTWFLVELAHARVNNDLQMSS 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,432,801
Number of Sequences: 5004
Number of extensions: 66324
Number of successful extensions: 147
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)