Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16e22r
(894 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce... 33 0.041
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 32 0.096
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 31 0.22
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop... 29 0.89
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa... 29 1.2
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 28 1.6
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 28 2.1
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 28 2.1
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 2.7
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch... 27 2.7
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 3.6
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 27 3.6
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 27 3.6
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 27 4.8
SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po... 27 4.8
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni... 26 6.3
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 26 6.3
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos... 26 6.3
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 26 6.3
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy... 26 6.3
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch... 26 6.3
SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces ... 26 6.3
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 26 6.3
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 26 6.3
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 26 6.3
SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar... 26 8.3
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 26 8.3
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 26 8.3
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 8.3
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 26 8.3
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 8.3
>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 33.5 bits (73), Expect = 0.041
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = -1
Query: 531 RDKNNEASKRSRMNRKLKELQMEQLAIDLEERNKKLRVKADILE 400
R +N AS R R+ +KLKE Q+E+ A +L E+ L + LE
Sbjct: 271 RRRNTAASARFRIKKKLKEQQLERTAKELTEKVAILETRVRELE 314
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 32.3 bits (70), Expect = 0.096
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = -1
Query: 840 SESQLDSDNEDRRTHLSK--RKHLDSDDSDETYTPFAEQTSRKYKRKKSNVP 691
+E + D D++D ++K +H++ DDS E + P E+ R+ ++K+N P
Sbjct: 733 AELRGDEDDQDENDQVTKVEEEHMEDDDSVEEFDPIIEE--RQRMKRKANRP 782
>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 266
Score = 31.1 bits (67), Expect = 0.22
Identities = 26/136 (19%), Positives = 63/136 (46%), Gaps = 2/136 (1%)
Frame = -1
Query: 768 DDSDETYTPFAEQTSRKYKRKKSNVPIKEMI--LALEGSRQVGTXXXXXXXXXRDSTLSS 595
D++ T P +++ + K+KK+N P ++ + LE R G+ D +
Sbjct: 27 DEAAITKPPASKKKRKNRKKKKNNGPSEQFVGNNDLEEQRS-GSIDSKDKEKPLDEKVKE 85
Query: 594 TCSIDENSSNISTQESKYRELRDKNNEASKRSRMNRKLKELQMEQLAIDLEERNKKLRVK 415
+ ++ S++ + R+ ++ E R +N K + L +++ +E KL+ +
Sbjct: 86 LENANKTLSDLVRRIQIQRDEAEQKAEIYNRDALNTKQEHLDIKKRLEKSDETVCKLKEE 145
Query: 414 ADILEELTKKVKDALM 367
+ L+++ + V + L+
Sbjct: 146 NENLQDMLRNVGNELV 161
>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
pyrophosphate phosphatase fusion 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 29.1 bits (62), Expect = 0.89
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +3
Query: 519 YSCLSTLYTLILEWKYLMNFHQCCMWMIVCCLVSWGVGLFF 641
Y+ TL T + +YL++FH ++ ++ +GVGLF+
Sbjct: 510 YAIYLTLSTFVCSSRYLLDFHYLTQ-VVYGYMIGFGVGLFW 549
>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
Trk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 841
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +2
Query: 140 YVPINRQFFLCVVQVVFI--KDTYYPCQYATCI 232
+VP+NR FL ++ +FI +T +PC + T I
Sbjct: 530 FVPMNRNIFLLLISSLFIIAGNTGFPCFFRTFI 562
>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
3|||Manual
Length = 963
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +3
Query: 627 VGLFFWSQPVAIPQVQGSFL*LEHLTFSFYIFVMSVQQKVYRFHQNHHCP 776
+ + +SQPV I Q L H +FY+ + S+ QK Y + + CP
Sbjct: 445 IPMMVYSQPVTIEQRIQYVLSNCHCLSAFYLCMPSLCQKSYGTERRYLCP 494
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 27.9 bits (59), Expect = 2.1
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = -1
Query: 582 DENSSNISTQESKYRELRDKNNEASKRSRMNRKLKELQMEQLAIDLEERNKKLRVKAD 409
D + ++ Q + R+ R + E + N KL LQM A+ LEE NKK A+
Sbjct: 77 DGGAPSLKRQTIQKRQARRLDREENATVTAN-KLLALQMRHQAMLLEENNKKATALAN 133
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = -1
Query: 447 LEERNKKLR-VKADILEELTKKVKDALMAAILQK 349
++ER+ LR +K ILE++ +KV D L A + +K
Sbjct: 46 VQERDMSLRRIKKPILEKVVEKVLDTLKAEVEEK 79
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -1
Query: 573 SSNISTQESKYRELRDKNNEASKRSRMNRKLKELQMEQLAIDLEERN 433
S + SK ELR KRS+ NRK E+ A+DL+ N
Sbjct: 93 SDIVDAVSSKDEELRKHAKGEGKRSK-NRKRSSKHSEKQAVDLKSSN 138
>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 775
Score = 27.5 bits (58), Expect = 2.7
Identities = 18/78 (23%), Positives = 40/78 (51%)
Frame = -1
Query: 612 DSTLSSTCSIDENSSNISTQESKYRELRDKNNEASKRSRMNRKLKELQMEQLAIDLEERN 433
DS +S ++ ++ SK L + + ++ S + L ++ +EQ EE+
Sbjct: 528 DSAISQQYALVKDDVETLCNSSKISALLESSISSTDNS--GQSLLDIPIEQ-----EEQE 580
Query: 432 KKLRVKADILEELTKKVK 379
+ ++++ D+LEEL +V+
Sbjct: 581 RDMKIQLDLLEELQSRVQ 598
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 27.1 bits (57), Expect = 3.6
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -1
Query: 612 DSTLSSTCSIDENSSNISTQESKYRELRDK-NNEASKRSRMNRKLKELQMEQLAI 451
D L + CS+ + S N +QE RELRDK N+ S +K++ ++ AI
Sbjct: 701 DIRLYNDCSL-KYSLNTLSQEKILRELRDKLQNDHSSIFDAFQKMRNYMLQHQAI 754
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -1
Query: 555 QESKYRELRDKNNEASKRSRMNRKLKELQMEQLAIDLE 442
Q+ Y+++ +N AS ++ K++ELQ QL DL+
Sbjct: 183 QQKLYKDMEQEN--ASTIQKLTSKIRELQASQLDHDLQ 218
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 27.1 bits (57), Expect = 3.6
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = -1
Query: 531 RDKNNEASKRSRMNRKLKELQMEQLAIDLEERNKKLRVKADILEELTKKV--KDALMAAI 358
+ +N+E ++ ELQ QL+ +E K K +IL EL K+ K+ ++ I
Sbjct: 288 KQQNDEDYTNIMKSKVALELQSSQLSRQIEFSKKDESSKLNILSELESKISEKENELSEI 347
Query: 357 LQK 349
L K
Sbjct: 348 LPK 350
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 26.6 bits (56), Expect = 4.8
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 7/56 (12%)
Frame = -1
Query: 486 KLKELQMEQLAIDLEERNKKLRVK---ADILEEL----TKKVKDALMAAILQK*SK 340
K ++ ++E +IDL+ RN+ ++K A LEE T+K++ + ++QK +K
Sbjct: 3 KKQDNEVELYSIDLKNRNESAKIKLAYAKALEESILCETRKIEQEIKDQVVQKENK 58
>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 278
Score = 26.6 bits (56), Expect = 4.8
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +2
Query: 272 VVDLLSNKMQMLMSFNNTQNIHNLLHFCKIAAINASFTFLVSSS 403
VVDL S K L+ T+++ LL CK ++FT +SSS
Sbjct: 97 VVDLPSKKQNRLLQSCITKHVDRLLDLCKRNL--STFTIDISSS 138
>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 26.2 bits (55), Expect = 6.3
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -1
Query: 555 QESKYRELRDKNNEASKRSRMNRKLKELQMEQ-LAIDLEERNKKLRVKADILEELTK 388
++S L+ K + R+ R+++ L+ +Q L +EERNKK + L EL K
Sbjct: 167 RDSFQSRLKQKKQRSEFRAS-KREMERLERDQELRNKIEERNKKELETIEKLRELAK 222
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 26.2 bits (55), Expect = 6.3
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = -1
Query: 552 ESKYRELRDKNNEASKRSRMNRKLKELQMEQLAIDLEERNKKLRVKADILEELTKKVK 379
E K + + ++ S+ S+ ++K+K ++ A + E+ KKL E TK+ K
Sbjct: 14 EGKVPKSLKEESKNSQNSQNSQKIKRTLTDKNASNQEQGTKKLESSVGEQESATKRAK 71
>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 26.2 bits (55), Expect = 6.3
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 281 LLSNKMQMLMSFNNTQNIHNLLHFCKI-AAINASFTF 388
L +N L +FNN ++ N L+F + AA A FTF
Sbjct: 115 LSNNAHDSLPTFNNGSDLFNPLYFAVLNAATPARFTF 151
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 840 SESQLDSDNEDRRTHLSKRKHLDSDDSDETY 748
+ES D D +D T S+ K + SDD + Y
Sbjct: 203 AESDEDEDFDDAPTKGSRHKRIVSDDESDDY 233
>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 26.2 bits (55), Expect = 6.3
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -1
Query: 855 PVTPKSESQLDSDNEDRRTHLSKRKHLDSD-DS-DETYTPFAEQTSRKYKRKKS 700
PVT + ++ +DNE +R L++D DS YT ++ KY+ KK+
Sbjct: 429 PVTESVDEEVSTDNEVEYDSDDERDRLEADLDSMYSDYTKRKAESDVKYRVKKA 482
>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 6.3
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = -1
Query: 510 SKRSRMNRKLKELQMEQLAIDLEERNKKLRVKADILEE 397
SK++ +N + KEL ++ DLE R K+ A+ LEE
Sbjct: 356 SKKASINLEGKELMVKARIEDLEVRINKITSVANNLEE 393
>SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 229
Score = 26.2 bits (55), Expect = 6.3
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = -1
Query: 558 TQESKYRELRDKNNEASKRSRMNRKLKELQMEQLAID--LEERNKKLRVKADILEELTK 388
++E++ +L+ + K S NRK + ++ ID LE R ++ R++A+ EEL K
Sbjct: 7 SREARVEKLKKIREQMRKSSHENRKEVVQEHSRMRIDPALERRLERKRMEAE--EELAK 63
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 26.2 bits (55), Expect = 6.3
Identities = 11/39 (28%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +3
Query: 528 LSTLYTLILEWKY-LMNFHQCCMWMIVCCLVSWGVGLFF 641
+ ++ ++LE + L+ H+C +M++C +V + G+FF
Sbjct: 873 IKDVFNVLLEGRCSLILSHRCFQYMVLCAIVQFS-GVFF 910
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 26.2 bits (55), Expect = 6.3
Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 3/110 (2%)
Frame = -1
Query: 831 QLDSDNEDRRTHLSK-RKHLDSDDSDETYTPFAEQTSRKYKRKKSNVP--IKEMILALEG 661
+L + ++++ ++SK K LD +D+ T P E+ S Y +K N+ I E+ +E
Sbjct: 342 KLQALSDEKDFYISKLEKSLDRNDT--TPVPSDEKLSN-YAAEKENLVSRISELEHTIE- 397
Query: 660 SRQVGTXXXXXXXXXRDSTLSSTCSIDENSSNISTQESKYRELRDKNNEA 511
+ + L +T ++EN S+ E + E+ + NN +
Sbjct: 398 QLTINNERDNERMSPAEFELETTQEVEENDSDSHDDEETWCEVCETNNHS 447
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 26.2 bits (55), Expect = 6.3
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Frame = -1
Query: 873 KNNDYEPVTPKSESQLDSDNED----RRTHLSKRKHLDSDDSDETYTPFAEQTSRKY--K 712
+N+ + + K + L + ED T SK +LDS+ +D++ + S+KY
Sbjct: 141 RNSRLQQLIEKKRNALKKEQEDLIQNSATSHSKSDNLDSESADDSDLADESELSKKYTSD 200
Query: 711 RKKSNVPIKEMI 676
RK N K ++
Sbjct: 201 RKIRNASKKALL 212
>SPBC800.06 |brx1||ribosome biogenesis protein
Brx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 771 SDDSDETYTPFAEQTSRKYKRKKSNVPIKEMILAL 667
++D DE Y P Q + K VPIK+ +L L
Sbjct: 16 NEDEDEEYVPV--QNGQGNKHSAGFVPIKQKVLVL 48
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 25.8 bits (54), Expect = 8.3
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = -1
Query: 582 DENSSNISTQESKYRELRDKNNEASKRSRMNRKLKELQMEQLAIDLEERNKKLRVKAD 409
DE + E+K +E+ + + + + E QL +LEE K+LR+KAD
Sbjct: 16 DEAVARAEAAEAKLKEVELQLSLKEQEYESLSRKSEAAESQLE-ELEEETKQLRLKAD 72
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/57 (24%), Positives = 24/57 (42%)
Frame = -1
Query: 603 LSSTCSIDENSSNISTQESKYRELRDKNNEASKRSRMNRKLKELQMEQLAIDLEERN 433
+S DE SS + + E D +NE ++ + + L E L + E+N
Sbjct: 910 ISDESETDEESSGLEESDLLDSEDEDIDNEMQLSRELDEEFERLTNESLLTRMHEKN 966
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -1
Query: 873 KNNDYEPVTPKSESQLDSDNEDRRTHLSKRKHLDSDD 763
+NN+ P P S S + D + KH DS+D
Sbjct: 82 RNNNVSPHIPSPSSFSSSSSSDLDKSMLDEKHPDSED 118
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 25.8 bits (54), Expect = 8.3
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Frame = -1
Query: 849 TPKSESQLDSDNEDRRTHLSKRKHLDSD-----DSDETYTPFAEQTSRKYKRKKSNVPIK 685
TP+ +D D R T LS+RK + ++ +S ET E+ + K K + +
Sbjct: 771 TPEILKDVDVDFLKRNTSLSRRKSMPAEIKRHKESSETKPVDKEEVKKNEKEKDDPMRLA 830
Query: 684 EMIL 673
+ +L
Sbjct: 831 QQLL 834
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 8.3
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = -1
Query: 588 SIDENSSNISTQESKYRELRDKNNEA-SKRSRMNRKLKELQMEQLAIDLEERNKKLRVKA 412
SIDE +N+S+++ +++ + EA S + KL E+ E+ + +NKK++
Sbjct: 407 SIDEYQNNLSSKDKMVKQVSSQLEEARSSLAHATGKLAEINSER-----DFQNKKIKDFE 461
Query: 411 DILEEL 394
I ++L
Sbjct: 462 KIEQDL 467
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,519,855
Number of Sequences: 5004
Number of extensions: 71648
Number of successful extensions: 286
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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