Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16e22f
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical pr...    32   0.36 
Z74475-2|CAA98958.4|  385|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U53139-5|AAK18933.2|  322|Caenorhabditis elegans Serpentine rece...    30   1.4  
L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.        30   1.9  
AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical...    30   1.9  
AF068721-9|AAC19265.1|  570|Caenorhabditis elegans Hypothetical ...    29   3.3  
AF022985-13|AAB69968.1|  375|Caenorhabditis elegans Hypothetical...    29   4.4  
AF063007-7|AAC16428.1|  659|Caenorhabditis elegans Hypothetical ...    28   5.8  

>Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical
           protein C27B7.4 protein.
          Length = 1274

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
 Frame = +2

Query: 422 RLKPEKNQQANGLTGVIHQGNNGVMPQGTVPTASFSEEYLKPEQ---LYASTMLHGSNSE 592
           +L+ ++ QQ   L G++  GNNG+MP        F  ++  P+Q   +  +   H +N +
Sbjct: 653 QLQQQQQQQQQQLQGMMMMGNNGMMP-------GFGAQF-HPQQNGMMMQNGSWHPNNYQ 704

Query: 593 FFQELDQLCSDPEREEQTRTIDSHKETEKRACSFDTP 703
                + + S+P     + T  S K+T+K   S   P
Sbjct: 705 MPSPFNSIPSNPSTPTSSSTSKSAKKTKKPRGSKKAP 741


>Z74475-2|CAA98958.4|  385|Caenorhabditis elegans Hypothetical
           protein R04F11.3 protein.
          Length = 385

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 382 SQDSKHFESSRPRSFKARKEPTGERSNRSDSPRK 483
           SQDS  F SSR +S +  K P  +R   +D  +K
Sbjct: 245 SQDSDEFPSSREQSVEKEKSPPAKRKRVNDENKK 278


>U53139-5|AAK18933.2|  322|Caenorhabditis elegans Serpentine
           receptor, class xa protein4 protein.
          Length = 322

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 74  ILYLLRRLKHCSFKFDSFFTKTESHRTLVL 163
           I YL+R    CS  F  +F +T+S R LVL
Sbjct: 266 ITYLVRLFAFCSLNFFVYFVETKSTRNLVL 295


>L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.
          Length = 2553

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/57 (26%), Positives = 30/57 (52%)
 Frame = +2

Query: 290  LKRSPARVGATISELNTPIQTPKDMVFSQTSLKTRNILKVVDLDRLKPEKNQQANGL 460
            L +S  R+G ++++L T +   + + FSQ  L +  ++K +D   +  +K   A  L
Sbjct: 1053 LDQSANRLGTSLADLRTSVNDAQQLNFSQQLLYSEELIKELDDQLVNTQKRAIAREL 1109


>AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical
            protein Y71G12B.11a protein.
          Length = 2553

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/57 (26%), Positives = 30/57 (52%)
 Frame = +2

Query: 290  LKRSPARVGATISELNTPIQTPKDMVFSQTSLKTRNILKVVDLDRLKPEKNQQANGL 460
            L +S  R+G ++++L T +   + + FSQ  L +  ++K +D   +  +K   A  L
Sbjct: 1053 LDQSANRLGTSLADLRTSVNDAQQLNFSQQLLYSEELIKELDDQLVNTQKRAIAREL 1109


>AF068721-9|AAC19265.1|  570|Caenorhabditis elegans Hypothetical
           protein ZK1055.7 protein.
          Length = 570

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 35/131 (26%), Positives = 53/131 (40%)
 Frame = +2

Query: 323 ISELNTPIQTPKDMVFSQTSLKTRNILKVVDLDRLKPEKNQQANGLTGVIHQGNNGVMPQ 502
           +S L T    PK        L+ +N L+ +  DR      +  + L  V  Q   G++  
Sbjct: 76  VSRLPTEADPPKITNLKAAILEEKNRLQKIT-DR-GTVVQKCVDNLDKVFEQVGGGLVNP 133

Query: 503 GTVPTASFSEEYLKPEQLYASTMLHGSNSEFFQELDQLCSDPEREEQTRTIDSHKETEKR 682
                AS +E  L  E L      +GSNSE ++E  +      RE+Q +   S  E E R
Sbjct: 134 PKDGVASLNEGTL--ESLTNFFQFYGSNSELYREKLRSVEAGHREQQEKV--SKLENELR 189

Query: 683 ACSFDTPHTSF 715
           A   +    +F
Sbjct: 190 ALMHNLNEEAF 200


>AF022985-13|AAB69968.1|  375|Caenorhabditis elegans Hypothetical
           protein T15B7.15 protein.
          Length = 375

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = +2

Query: 530 EEYLKPEQLYASTMLHG-SNSEFFQELDQLCSDPE-REEQTR--TIDSHKETEKR 682
           E+Y++ E    S +     NS+  Q++  L  D   RE+QTR  TIDSHK   K+
Sbjct: 276 EKYIQIENELNSKLDEALQNSDKCQKMTSLLEDQLLREQQTRKATIDSHKAQNKK 330


>AF063007-7|AAC16428.1|  659|Caenorhabditis elegans Hypothetical
           protein R119.5 protein.
          Length = 659

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +2

Query: 575 HGSNSEFFQELDQLCSDPEREEQTRTIDSHKETEKRACSFDTPHTS 712
           +G  SE  QEL     +P+    T T     E E+  CS D   T+
Sbjct: 527 NGDLSEDEQELSDALEEPQESPSTSTESQVSEDEEPCCSTDPASTT 572


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,301,554
Number of Sequences: 27780
Number of extensions: 341401
Number of successful extensions: 1206
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1206
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)