Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16e21r
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p...    42   8e-05
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    30   0.47 
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    29   0.83 
SPAC23H4.08 |||RNA polymerase II associated protein |Schizosacch...    29   1.1  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   2.5  
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ...    26   5.8  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    26   5.8  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    26   7.7  

>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 42.3 bits (95), Expect = 8e-05
 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
 Frame = -2

Query: 439 SRDPERTPFHWNPEKNAGFSTAD-KTWLPMAEGYETLNVEVQKASERSHLKVYKALSDLR 263
           +RD  RTP HW+   N GF+ A  K W+ +   Y+  N   Q     S    +    +LR
Sbjct: 435 ARDNGRTPMHWDSSPNGGFTKAGVKPWMRVTNDYKEWNAANQVNDPESPYTFWSKALELR 494

Query: 262 QE--NTFRYGRYESLA-LNQDIFVFKRWLNDVIYLVVVN 155
           +E  +   YG +E ++  +  I  F R  +    ++++N
Sbjct: 495 KELKDAVVYGSFELISEEDPSIVAFVRESSTYKLIILLN 533


>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -2

Query: 400 EKNAGFSTADKTWLPMAEGYETLNVEVQKASERSHLKVYKALSDLRQENTFRYG 239
           E N  +++  K W+P  EGY     E   A+ +SH+ +    ++L  ENT   G
Sbjct: 432 EINTMYASNLKPWMPHPEGYREFGREQNNATLKSHIGLNGETTEL-IENTDNQG 484


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -2

Query: 646 VGNHDNSRM-ATRYG-ASLVDGINMLVLLLPGVAVTYMGEEIGL 521
           V NHD  R  A   G A L+ G  +  LL PG+ + Y G+E G+
Sbjct: 459 VANHDVFRWGAIENGTARLILGTMITSLLFPGIPLLYYGDEQGM 502


>SPAC23H4.08 |||RNA polymerase II associated protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 277

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -3

Query: 438 REIPKGLLSIGTPRKTLDSLPLTR 367
           RE  KG+LS  +PR T+ +LP T+
Sbjct: 112 RENTKGILSFSSPRYTIQNLPSTQ 135


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -2

Query: 646 VGNHDNSRMATRYGAS--LVDGINMLVLLLPGVAVTYMGEEIGL 521
           V N+D  R A+    S  L+ G  M   L PG  + Y G+E GL
Sbjct: 452 VSNYDVFRWASVADGSRRLILGTMMTFFLFPGAPLIYYGDEQGL 495


>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 411 WKGVLSGSLDDSTYFIGSLVLHP 479
           W    S SLDD+T+ +GS V +P
Sbjct: 179 WIHSASASLDDNTHNLGSFVTNP 201


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 445 ESSRDPERTPFHWNPEKNAGFSTA 374
           +S  DP ++ FHW P+ +  F+ A
Sbjct: 343 QSLSDPIKSRFHWYPKSSTRFAVA 366


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1085

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 744  IKSKLNGICAPFKSPSPKYLNHI 812
            I++KL+ IC P +  SPK  N++
Sbjct: 968  IRNKLSPICRPSQGSSPKLKNNL 990


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,662,099
Number of Sequences: 5004
Number of extensions: 79399
Number of successful extensions: 203
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)