Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16e20r
         (907 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.14c |cox17||metallochaperone Cox17|Schizosaccharomyces ...    52   1e-07
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    26   8.5  

>SPBC26H8.14c |cox17||metallochaperone Cox17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 70

 Score = 52.0 bits (119), Expect = 1e-07
 Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
 Frame = -2

Query: 903 KACCAXPGTKRARXACIIE--NGEENCGPLIEEHKACMRKMGFNI 775
           K CCA P TK+AR AC+++  NG   C  LIE HK CM + G+ +
Sbjct: 26  KPCCACPETKQARDACMLQSSNGPIECAKLIEAHKKCMAQYGYEV 70


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 659 IINLFFFFHIGTDLLTNKQCCRRYFVANNTLIEN 760
           I +L   F +G D+LT + C R   +ANN  + N
Sbjct: 570 IPSLHHAFFVG-DILTKRDCLRLQVLANNVNVVN 602


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,400,607
Number of Sequences: 5004
Number of extensions: 67699
Number of successful extensions: 139
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)