Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16e20r
         (907 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    24   1.7  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    24   1.7  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   2.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.9  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   2.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.9  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   8.8  

>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 731 STYDSIAYLSANQFQYEKKKTD 666
           +T+D     + N F YEK+ TD
Sbjct: 220 TTFDDYLDYAINPFDYEKRSTD 241


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 731 STYDSIAYLSANQFQYEKKKTD 666
           +T+D     + N F YEK+ TD
Sbjct: 220 TTFDDYLDYAINPFDYEKRSTD 241


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 833 FSSPFSIMHASRALXV 880
           FS  F I+HA RAL +
Sbjct: 192 FSESFQILHAGRALRI 207


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 833 FSSPFSIMHASRALXV 880
           FS  F I+HA RAL +
Sbjct: 192 FSESFQILHAGRALRI 207


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 264 NYNIVFQTMSKKNDYKVTSLSLHLVTSQLL 353
           NYN + + +S  ND  V  L L L  SQL+
Sbjct: 31  NYNRLIRPVSNNNDTVVVKLGLRL--SQLI 58


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 833 FSSPFSIMHASRALXV 880
           FS  F I+HA RAL +
Sbjct: 192 FSESFQILHAGRALRI 207


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = -1

Query: 193 SIALFI--AVGFFI*LLLCCDKIVFEMCPKVTFNSLLNF 83
           SI L +  ++ F I    CC  I    C  +TF S L F
Sbjct: 52  SITLIVLGSIIFVISFFGCCGAIRESHCMTITFASFLLF 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,519
Number of Sequences: 438
Number of extensions: 4569
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)