Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16e20f
         (378 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0003 + 29476-29847,30192-31519,31612-31722,31836-32112,322...    29   1.6  
03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130...    27   6.5  
10_08_0122 - 14982676-14983043,14983957-14985145                       26   8.6  
06_03_0706 + 23719392-23719641,23720337-23720383,23720988-237210...    26   8.6  

>05_01_0003 + 29476-29847,30192-31519,31612-31722,31836-32112,
            32233-33714
          Length = 1189

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 13/48 (27%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = -1

Query: 333  LS*VLCS**YFD*KFSMTLNI-ESHFSHTGLVFFNKWSTVLFSIFYNA 193
            +S ++C   Y +  F +TL + E++ S +G  F+N W+   +++F+ +
Sbjct: 904  ISAMICYFFYKNITFGVTLFLYEAYTSFSGQTFYNDWALSTYNVFFTS 951


>03_01_0161 +
           1307206-1307769,1307979-1308101,1308182-1308286,
           1308688-1308867,1308988-1309050,1309151-1309345,
           1309704-1309805,1309885-1309947,1310045-1310113,
           1310215-1310270,1310587-1310755
          Length = 562

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 17/48 (35%), Positives = 20/48 (41%)
 Frame = -2

Query: 194 HASRALFVSGQAQQGFSLGFSTFSGAGPSKTLTSTALALAFPIFQEVF 51
           +A RALF  G  +     G  T  G GP K   S    L  P  Q+ F
Sbjct: 152 NAKRALFSDGDDEGVLFPGVFTTRGTGPRKIPRSPYKVLDAPALQDDF 199


>10_08_0122 - 14982676-14983043,14983957-14985145
          Length = 518

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -2

Query: 257 LIQALCSSISGPQFSSPF-SIMHASRALFVSGQAQQGFSLGFSTFSGAG 114
           ++QA  S +   Q   P  S  HA+R L  S Q     +LGF TF   G
Sbjct: 97  MVQATFSLLD--QHGKPVPSHTHATRLLSTSNQDDMANNLGFETFIAKG 143


>06_03_0706 +
           23719392-23719641,23720337-23720383,23720988-23721060,
           23721323-23721540,23721868-23722170,23722322-23722399,
           23723064-23723549,23723875-23724312
          Length = 630

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -2

Query: 239 SSISGPQFSSPFSIMHASRALFVSGQAQQGFSLG 138
           +S   PQFSSPF +   S+A+F    A  G  LG
Sbjct: 307 NSSGKPQFSSPFPV--GSKAIFEDKTAPLGAVLG 338


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,677,946
Number of Sequences: 37544
Number of extensions: 151603
Number of successful extensions: 428
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)