Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16e19f
         (746 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    48   9e-06
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    43   2e-04
AC024791-36|AAF60654.3|  481|Caenorhabditis elegans Innexin prot...    33   0.28 
AF098996-1|AAM34815.1|  523|Caenorhabditis elegans Hypothetical ...    31   0.66 
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    31   1.1  
Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z70684-8|CAA94603.2|  360|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U40945-6|AAS80346.1|  437|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U40945-5|AAS80344.1|  617|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AC006769-6|AAF60582.1|  274|Caenorhabditis elegans Hypothetical ...    29   4.6  
Z81038-14|CAI79153.1|  696|Caenorhabditis elegans Hypothetical p...    28   6.1  
Z81038-13|CAB02755.1|  971|Caenorhabditis elegans Hypothetical p...    28   6.1  
Z83237-6|CAE17879.1|  549|Caenorhabditis elegans Hypothetical pr...    28   8.1  
AF040650-4|AAB95009.2|  291|Caenorhabditis elegans Hypothetical ...    28   8.1  

>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 40/167 (23%), Positives = 76/167 (45%), Gaps = 1/167 (0%)
 Frame = +2

Query: 176 RIVGGSPATLGQFPYQGGLLITIVVNGQPRTGVCGASLVTTNRLLTAAHCWFDGTNQXXX 355
           R++GGS ++   +P+   LL  +   G  R   CG SL+  N +LTAAHC+    ++   
Sbjct: 57  RLIGGSESSPHSWPWTVQLLSRL---GHHR---CGGSLIDPNFVLTAAHCF--AKDRRPT 108

Query: 356 XXXXXXXXXXFSGGTRVETSSIVMHPNWSPATIRN-DVAVIYLPSPVTLSDTINTIALPS 532
                        G+    +++ +HP ++     + D A++ +  PV  S T   I LPS
Sbjct: 109 SYSVRVGGHRSGSGSPHRVTAVSIHPWYNIGFPSSYDFAIMRIHPPVNTSTTARPICLPS 168

Query: 533 GQELQENFVGSSAVASGFGLTSSSGSITTNQVLSHVNLDVINNFVCT 673
              ++        V +G+G T    S++    L  +++ +++   C+
Sbjct: 169 LPAVENRL----CVVTGWGSTIEGSSLSA-PTLREIHVPLLSTLFCS 210


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 49/206 (23%), Positives = 80/206 (38%), Gaps = 7/206 (3%)
 Frame = +2

Query: 149 AEEAGLSN-TRIVGGSPATLGQFPYQGGLLITIVVNGQPRTGVCGASLVTTNRLLTAAHC 325
           A +A  S   R+VGG     G FP+   L      N   +   CGAS++    L+TAAHC
Sbjct: 16  ARDAAKSRIARVVGGFETVPGAFPWTAALR-----NKATKAHHCGASILDKTHLITAAHC 70

Query: 326 WFDGTNQXXXXXXXXXXXXXFSGGTR--VETSSIVMHPNWSPATIRNDVAVIYLPSP-VT 496
           + +                  + G         I  +P +      +D+A++ +P P + 
Sbjct: 71  FEEDERVSSYEVVVGDWDNNQTDGNEQIFYLQRIHFYPLYKD-IFSHDIAILEIPYPGIE 129

Query: 497 LSDTINTIALPSGQELQENFVGSSAVASGFGLTSSSGSITTNQVLSHVNLDVINNFVCTF 676
            ++    I LPS   +     G   V SG+G    S  +   + L    + +IN F C  
Sbjct: 130 FNEYAQPICLPSKDFVYT--PGRQCVVSGWG----SMGLRYAERLQAALIPIINRFDCVN 183

Query: 677 AFPFV--LQSSNLCTSG-RGGVGTCR 745
           +      +  S  C     GG+ +C+
Sbjct: 184 SSQIYSSMSRSAFCAGYLEGGIDSCQ 209


>AC024791-36|AAF60654.3|  481|Caenorhabditis elegans Innexin protein
           21 protein.
          Length = 481

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 45  YWWLTAVLLHCLCMKIRYTVTLLSMVYQKQRGFARLKRQD 164
           YWW   V    LC  I YT+ LL   Y++    + ++ +D
Sbjct: 291 YWWFLLVSFISLCSAIHYTIILLVPQYRRHEFKSMIRTED 330


>AF098996-1|AAM34815.1|  523|Caenorhabditis elegans Hypothetical
           protein T11F1.7 protein.
          Length = 523

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 16/29 (55%), Positives = 21/29 (72%)
 Frame = +2

Query: 581 GFGLTSSSGSITTNQVLSHVNLDVINNFV 667
           G+G TSS  SIT N  L+  N+DVI+NF+
Sbjct: 115 GYGCTSSGLSITNNSQLT--NIDVISNFL 141


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 272 VCGASLVTTNRLLTAAHCW 328
           +CG +L+T   +LTAAHC+
Sbjct: 61  ICGGTLITLKHVLTAAHCF 79


>Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical
           protein F15B9.5 protein.
          Length = 297

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 266 TGVCGASLVTTNRLLTAAHCWFDG 337
           T VCG  L+  + ++T+AHC F G
Sbjct: 43  TNVCGGVLIAPSIVITSAHCVFSG 66


>Z70684-8|CAA94603.2|  360|Caenorhabditis elegans Hypothetical
           protein F28D1.8 protein.
          Length = 360

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/75 (22%), Positives = 28/75 (37%)
 Frame = +2

Query: 395 GTRVETSSIVMHPNWSPATIRNDVAVIYLPSPVTLSDTINTIALPSGQELQENFVGSSAV 574
           G R     ++  PN      + D  V   P+P   + T     +  G    E  V +   
Sbjct: 187 GNRSTIMILLQKPNTMKEKEKEDQKVSNNPAPAASASTEGATTVTEGTTAAETTVATETT 246

Query: 575 ASGFGLTSSSGSITT 619
           A+G G T ++ +  T
Sbjct: 247 ATGTGTTEAAATTVT 261


>U40945-6|AAS80346.1|  437|Caenorhabditis elegans Hypothetical
           protein F10D7.5c protein.
          Length = 437

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = -3

Query: 393 PLKSVTEPRTTVTLVPWLVPSNQQ*AAVNSLLVVTSEAPQTPVRGCPLTTMVISRPP 223
           P  S T P T   L+  ++PS     A  ++L  +S   + P R  P TT  +  PP
Sbjct: 303 PALSTTRP-TIDDLLGEIIPSTPPPVAPRAVLGSSSSTSRLPNRSSPATTTAMMSPP 358


>U40945-5|AAS80344.1|  617|Caenorhabditis elegans Hypothetical
           protein F10D7.5a protein.
          Length = 617

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = -3

Query: 393 PLKSVTEPRTTVTLVPWLVPSNQQ*AAVNSLLVVTSEAPQTPVRGCPLTTMVISRPP 223
           P  S T P T   L+  ++PS     A  ++L  +S   + P R  P TT  +  PP
Sbjct: 483 PALSTTRP-TIDDLLGEIIPSTPPPVAPRAVLGSSSSTSRLPNRSSPATTTAMMSPP 538


>AC006769-6|AAF60582.1|  274|Caenorhabditis elegans Hypothetical
           protein Y45G12C.6 protein.
          Length = 274

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 5   YTVMMKTFVATCLLLVAYGSAFTLPLHENPVYGYLT 112
           YT++++T +  C+L +  G   TLP  +    G +T
Sbjct: 186 YTLIIQTLIPMCILFIPTGFLLTLPFFDVKYVGRVT 221


>Z81038-14|CAI79153.1|  696|Caenorhabditis elegans Hypothetical
           protein C25A1.10b protein.
          Length = 696

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/68 (22%), Positives = 31/68 (45%)
 Frame = -2

Query: 475 NDGHIITNGSRRPIRMHYNRTGLNSGATAEECHGTKNDRYARALVGAIEPAVSSCQ*SVS 296
           +DG +  NG ++P+ +   ++       AE    + +D  A+ L    +PA +  Q   +
Sbjct: 87  DDGAVKKNGVQKPVNVAAKKSATPVQKKAESSSSSDSDAPAKKLTPVKKPAQTPAQKKAA 146

Query: 295 GNKRSSAD 272
            +  S +D
Sbjct: 147 SSSDSDSD 154


>Z81038-13|CAB02755.1|  971|Caenorhabditis elegans Hypothetical
           protein C25A1.10a protein.
          Length = 971

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/68 (22%), Positives = 31/68 (45%)
 Frame = -2

Query: 475 NDGHIITNGSRRPIRMHYNRTGLNSGATAEECHGTKNDRYARALVGAIEPAVSSCQ*SVS 296
           +DG +  NG ++P+ +   ++       AE    + +D  A+ L    +PA +  Q   +
Sbjct: 87  DDGAVKKNGVQKPVNVAAKKSATPVQKKAESSSSSDSDAPAKKLTPVKKPAQTPAQKKAA 146

Query: 295 GNKRSSAD 272
            +  S +D
Sbjct: 147 SSSDSDSD 154


>Z83237-6|CAE17879.1|  549|Caenorhabditis elegans Hypothetical
           protein R06B9.6 protein.
          Length = 549

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 441 LLLPFVMMWPSFTYPVPLLCLIQSIR 518
           ++L F + W S TY +P L LI  +R
Sbjct: 285 VILDFPIEWISLTYRIPFLLLISDLR 310


>AF040650-4|AAB95009.2|  291|Caenorhabditis elegans Hypothetical
           protein T04B8.3 protein.
          Length = 291

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 741 QVPTPPRPLVHKFEDCKTKGKANVQTKLFITSRFT 637
           ++   P PL H + + K KGK +V    + T +FT
Sbjct: 188 ELEAEPFPLYHIYGNTKAKGKMHVLVAPYSTQKFT 222


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,885,238
Number of Sequences: 27780
Number of extensions: 386128
Number of successful extensions: 1210
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)