Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16e19f
         (746 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    57   2e-10
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.7  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   3.0  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   3.0  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   3.0  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 56.8 bits (131), Expect = 2e-10
 Identities = 44/192 (22%), Positives = 84/192 (43%), Gaps = 7/192 (3%)
 Frame = +2

Query: 173 TRIVGGSPATLGQFPYQGGLLITIVVNGQPRTGVCGASLVTTNRLLTAAHCWFD-GTNQX 349
           +RIVGG+   + +FP   G+  T     +P   +CGA++++   +LTAAHC  D  T + 
Sbjct: 159 SRIVGGTNTGINEFPMMAGIKRTY----EPGM-ICGATIISKRYVLTAAHCIIDENTTKL 213

Query: 350 XXXXXXXXXXXXFSGGTRV--ETSSIVMHPNWSPATIR----NDVAVIYLPSPVTLSDTI 511
                             V    + +++HP +          ND+A++     +   D +
Sbjct: 214 AIVVGEHDWSSKTETNATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGDKV 273

Query: 512 NTIALPSGQELQENFVGSSAVASGFGLTSSSGSITTNQVLSHVNLDVINNFVCTFAFPFV 691
               LP  Q   ++F GS     G+G TS +G +  + +L    L+++    C   +  +
Sbjct: 274 GPACLPF-QHFLDSFAGSDVTVLGWGHTSFNGML--SHILQKTTLNMLTQVECYKYYGNI 330

Query: 692 LQSSNLCTSGRG 727
           + ++ +C   +G
Sbjct: 331 MVNA-MCAYAKG 341


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 735 PTPPRPLVHKFEDCKTKGKANVQ 667
           P PP PL  + ED    G+A ++
Sbjct: 440 PLPPLPLHTECEDLSVSGEAGIE 462


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 735 PTPPRPLVHKFEDCKTKGKANVQ 667
           P PP PL  + ED    G+A ++
Sbjct: 440 PLPPLPLHTECEDLSVSGEAGIE 462


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 104 YLTKYGVPEAERIRKAEEAGLSN 172
           YLTK+ VPE       E+ GL++
Sbjct: 208 YLTKHNVPEQRLNYFTEDVGLNH 230


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 104 YLTKYGVPEAERIRKAEEAGLSN 172
           YLTK+ VPE       E+ GL++
Sbjct: 208 YLTKHNVPEQRLNYFTEDVGLNH 230


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +2

Query: 38  CLLLVAYGSAFTLPLHENPVYGYLTKYGVPEAERIRKAEEAGLSNTRIVGGS 193
           C  +  Y S+  +      V  +L+     E   IRK +E+   +  I+GGS
Sbjct: 217 CTYVALYPSSVQVIALGVGVSNFLSSTRTAETGTIRKCDESSPHDQVIIGGS 268


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,204
Number of Sequences: 438
Number of extensions: 4775
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)