Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16e16r
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   162   5e-41

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  162 bits (393), Expect = 5e-41
 Identities = 84/182 (46%), Positives = 110/182 (60%), Gaps = 1/182 (0%)
 Frame = -3

Query: 660 LXV*XXHIFXVGIDIDTRAYFTSAXXXXAVPTGIKXXGXLAXIHGTXINXNP-NILXRLG 484
           L V   H+F VG+D+DTRAYF++A    A+PTGIK    LA + G  I  +   +L  +G
Sbjct: 291 LMVWSHHLFTVGLDVDTRAYFSAATMVIAIPTGIKIFSWLATLTGGAIQWSRVPMLYAIG 350

Query: 483 XVFLFTVGGLTGVXLANSSIDIXLHDTXYVVAHFHYVLSXXXXXXXXXXXINXXPLXTGL 304
            + LFT+GGLTGV L+NS +DI  HDT +VVAHFHYVLS               P   GL
Sbjct: 351 FLILFTIGGLTGVILSNSVLDIAFHDTYFVVAHFHYVLSMGALFGLCGAYY-WSPKMFGL 409

Query: 303 SLXSYILKIQFFTIXIGVNITXXPQXFLGLAGIPRRXSDYPDSYISXNIISSLGSYXSXX 124
                +  IQF+ + IGVNI   PQ FLGL G+PRR  DYP++++  N +SS+GS  S  
Sbjct: 410 MYNETLASIQFWILFIGVNIVFGPQHFLGLNGMPRRIPDYPEAFVGWNFVSSIGSVISIL 469

Query: 123 SV 118
           S+
Sbjct: 470 SL 471


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,380,563
Number of Sequences: 5004
Number of extensions: 15797
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)