Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV16e13r
         (827 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615...   107   1e-23
03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631...   107   1e-23
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890...   103   2e-22
07_01_0243 - 1783903-1784658                                           29   4.5  
01_06_1261 - 35826513-35828941,35829201-35829294                       28   7.9  

>07_03_1260 -
           25260872-25261101,25261199-25261312,25261473-25261596,
           25261755-25261839,25261917-25262033,25262122-25262207
          Length = 251

 Score =  107 bits (256), Expect = 1e-23
 Identities = 54/101 (53%), Positives = 69/101 (68%), Gaps = 3/101 (2%)
 Frame = -2

Query: 295 RLAAYNAKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVRSISTDGLLWGAAKLVPLA 116
           R AA  A   KK     KS+++LDVKPWDDETDM  LE+AVR++  +GLLWGA+KLVP+ 
Sbjct: 125 RAAAVKASGKKKES--GKSSVLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPVG 182

Query: 115 YGIHKLQISCVVEDDKVSIDWLTEE---IEKNEDYVQSVDM 2
           YGI KLQI   + DD VS+D L E+    E   +Y+QS D+
Sbjct: 183 YGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEYIQSCDI 223


>03_04_0016 +
           16461542-16461566,16462701-16462732,16463015-16463100,
           16463189-16463305,16463399-16463474,16463695-16463818,
           16464482-16464595,16464700-16464947
          Length = 273

 Score =  107 bits (256), Expect = 1e-23
 Identities = 54/101 (53%), Positives = 70/101 (69%), Gaps = 3/101 (2%)
 Frame = -2

Query: 295 RLAAYNAKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVRSISTDGLLWGAAKLVPLA 116
           R AA  A   KK     KS+++LDVKPWDDETDMA LE+AVR++  +GLLWGA+KLVP+ 
Sbjct: 141 RAAAVKASGKKKES--GKSSVLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVPVG 198

Query: 115 YGIHKLQISCVVEDDKVSIDWLTEE---IEKNEDYVQSVDM 2
           YGI KLQI   + DD VS+D L E+    E   +++QS D+
Sbjct: 199 YGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEFIQSCDI 239


>07_03_1580 +
           27888275-27888360,27888755-27888871,27888964-27889045,
           27889710-27889821,27889958-27890071,27890163-27890326
          Length = 224

 Score =  103 bits (247), Expect = 2e-22
 Identities = 51/95 (53%), Positives = 66/95 (69%), Gaps = 3/95 (3%)
 Frame = -2

Query: 277 AKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVRSISTDGLLWGAAKLVPLAYGIHKL 98
           +K + K     KS+++LDVKPWDDETDM  LE+AVRS+  +GL WGA+KLVP+ YGI KL
Sbjct: 124 SKASSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGIKKL 183

Query: 97  QISCVVEDDKVSIDWLTEE---IEKNEDYVQSVDM 2
           QI   + DD VS+D L EE    E   ++VQS D+
Sbjct: 184 QIMLTIVDDLVSVDSLIEEHLTEEPINEFVQSCDI 218


>07_01_0243 - 1783903-1784658
          Length = 251

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/40 (35%), Positives = 26/40 (65%)
 Frame = -3

Query: 471 ACKSVLKPWNHPAVSPLIVFNQKNLQQLLLIRMTKMMMLI 352
           +C S++ P   P + PL+  +Q +L++LLL   + MM+L+
Sbjct: 59  SCPSLVPP---PRLLPLVPLHQSHLRRLLLSLTSSMMVLV 95


>01_06_1261 - 35826513-35828941,35829201-35829294
          Length = 840

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 22/60 (36%), Positives = 33/60 (55%)
 Frame = -2

Query: 622 KAYYESLSKMDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRNLVISLQVRVETLE 443
           K  +ES S+  +V  LAG  + E+  KVISLE         I+ ++N    LQ R+++LE
Sbjct: 313 KQKFESSSEASAVH-LAGQVD-EIVDKVISLEIAASSQNAQINRMKNEADELQKRLDSLE 370


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,181,192
Number of Sequences: 37544
Number of extensions: 323891
Number of successful extensions: 753
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)