Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16e13f
(751 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun... 100 4e-22
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 30 0.40
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 29 0.71
SPAC1952.15c |rec24|mug6|meiotic recombination protein Rec24|Sch... 29 0.94
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr... 28 1.2
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 28 1.6
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 27 3.8
SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces po... 27 3.8
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 27 3.8
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 26 6.6
SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr 2|||... 25 8.7
>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 214
Score = 99.5 bits (237), Expect = 4e-22
Identities = 45/73 (61%), Positives = 56/73 (76%)
Frame = +2
Query: 533 RLAAYNAKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVRSISTDGLLWGAAKLVPLA 712
R+A YN KKA KP + KS + LDVKPWDDET M LE+AVRSI DGL+WG +KLVP+
Sbjct: 111 RVAEYNKKKAAKPKAVHKSLVTLDVKPWDDETPMDELEKAVRSIQMDGLVWGLSKLVPVG 170
Query: 713 YGIHKLQISCVVE 751
+G++K QI+ VVE
Sbjct: 171 FGVNKFQINLVVE 183
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 29.9 bits (64), Expect = 0.40
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Frame = -2
Query: 186 FRSNQTFSCNKAAMLIIPKFRFELYL-----NTIKTLVH-TIKLNFYVNKVNRANLTA 31
FRSN + S IIP LYL +TI T+ H T ++ +N+VN L A
Sbjct: 700 FRSNTSGSAKSEGYYIIPTTEKSLYLPLRNRSTIDTISHSTSRITSRMNRVNNRRLAA 757
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 29.1 bits (62), Expect = 0.71
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 269 TELSTKVISLENENKDLKKAIDDLRN 346
T+ +K+ S E ENK LK +ID+ +N
Sbjct: 388 TDAESKLSSFEQENKSLKGSIDEYQN 413
>SPAC1952.15c |rec24|mug6|meiotic recombination protein
Rec24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 350
Score = 28.7 bits (61), Expect = 0.94
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 104 VFKYNSNLNFGIISMAALLHEKVWLDRNVYNDAEKAYYESLSKM 235
+ + N+N G+IS A L V+L++ ++N A E L K+
Sbjct: 207 IMQNNANNGTGVISRAKFLEFYVFLEQLIFNKLSFASVEQLEKL 250
>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 319
Score = 28.3 bits (60), Expect = 1.2
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +2
Query: 173 WLDRNVYNDAEKAYYESLSKMDSVATLAGVP-NTELSTKVISLENENKDLKKAIDDLRNL 349
+++ N+ N+ +K ESL K + NT+LS K+ ENE +DL + L++
Sbjct: 5 FINSNINNE-DKLPMESLKKKFLKQNREIIKINTQLSIKIRESENEIQDLIQENFTLKSY 63
Query: 350 VISLQVR 370
++ L+ R
Sbjct: 64 LVKLEAR 70
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +2
Query: 218 ESLSKMDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRNLVISLQVRVETLE 385
E + M ++ ++G T + + +E+ENK L + D+RN V L+ + E
Sbjct: 242 ERTAAMQAIDDISGTIET-IKSDCYKVESENKGLINEVMDMRNFVQQLEQELYAFE 296
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -1
Query: 610 LYIQNNIRLCN*HWLFSFLCIICSKTLFLYLSCFS 506
LY+Q + W+F + C+ +LF +CFS
Sbjct: 210 LYLQGDPERVKKAWVFQSRLLFCTASLFEKTACFS 244
>SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 218
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +2
Query: 158 LHEKVWLDRNVYNDAEKAY--YESLSKMDSVATLAGVPNTELSTKVISLENENKDLKKAI 331
LHEK +D N Y DA +E SK +T + ++ ++ +K +++ I
Sbjct: 116 LHEKKVIDDNQYKDAMATVEAHEQASKSGDTSTSGAISKNDILKRIEEDRERHKRMRENI 175
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/62 (24%), Positives = 27/62 (43%)
Frame = +2
Query: 176 LDRNVYNDAEKAYYESLSKMDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRNLVI 355
+DR V + + YYESL K +A N +L +I + ++ D R + +
Sbjct: 471 VDREVEDQDDLDYYESLDKKSKMAKKLRKENHDLERDLIRASRHPELIELGEGDKRGITL 530
Query: 356 SL 361
+
Sbjct: 531 DI 532
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 25.8 bits (54), Expect = 6.6
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +2
Query: 227 SKMDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRNLVISLQ 364
+KM SV EL ++ SLE NKD + LR+ + SL+
Sbjct: 1475 AKMFSVQVQYEKREQELQKRIASLEKVNKDSLIDVRALRDRIASLE 1520
>SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 225
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 263 PNTELSTKVISLENENKDLKKAID 334
PNTEL+ + L KDLK A++
Sbjct: 37 PNTELTYAIDELSETLKDLKAAVE 60
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,694,127
Number of Sequences: 5004
Number of extensions: 49030
Number of successful extensions: 144
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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