Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV16e13f
(751 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631... 91 1e-18
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615... 89 3e-18
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890... 87 2e-17
07_01_0243 - 1783903-1784658 29 3.9
01_06_1261 - 35826513-35828941,35829201-35829294 28 6.9
08_01_0449 + 3965959-3966081,3966462-3966714,3967188-3967551,396... 28 9.1
08_01_0264 - 2142856-2143152,2143667-2143829,2143915-2143992,214... 28 9.1
07_03_1501 - 27005542-27005976,27006657-27008660 28 9.1
01_01_0538 - 3938389-3939727,3939828-3940203,3940299-3940516,394... 28 9.1
>03_04_0016 +
16461542-16461566,16462701-16462732,16463015-16463100,
16463189-16463305,16463399-16463474,16463695-16463818,
16464482-16464595,16464700-16464947
Length = 273
Score = 90.6 bits (215), Expect = 1e-18
Identities = 43/72 (59%), Positives = 53/72 (73%)
Frame = +2
Query: 533 RLAAYNAKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVRSISTDGLLWGAAKLVPLA 712
R AA A KK KS+++LDVKPWDDETDMA LE+AVR++ +GLLWGA+KLVP+
Sbjct: 141 RAAAVKASGKKKES--GKSSVLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVPVG 198
Query: 713 YGIHKLQISCVV 748
YGI KLQI +
Sbjct: 199 YGIKKLQIMMTI 210
>07_03_1260 -
25260872-25261101,25261199-25261312,25261473-25261596,
25261755-25261839,25261917-25262033,25262122-25262207
Length = 251
Score = 89.0 bits (211), Expect = 3e-18
Identities = 42/72 (58%), Positives = 52/72 (72%)
Frame = +2
Query: 533 RLAAYNAKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVRSISTDGLLWGAAKLVPLA 712
R AA A KK KS+++LDVKPWDDETDM LE+AVR++ +GLLWGA+KLVP+
Sbjct: 125 RAAAVKASGKKKES--GKSSVLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPVG 182
Query: 713 YGIHKLQISCVV 748
YGI KLQI +
Sbjct: 183 YGIKKLQIMMTI 194
>07_03_1580 +
27888275-27888360,27888755-27888871,27888964-27889045,
27889710-27889821,27889958-27890071,27890163-27890326
Length = 224
Score = 86.6 bits (205), Expect = 2e-17
Identities = 38/66 (57%), Positives = 49/66 (74%)
Frame = +2
Query: 551 AKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVRSISTDGLLWGAAKLVPLAYGIHKL 730
+K + K KS+++LDVKPWDDETDM LE+AVRS+ +GL WGA+KLVP+ YGI KL
Sbjct: 124 SKASSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGIKKL 183
Query: 731 QISCVV 748
QI +
Sbjct: 184 QIMLTI 189
>07_01_0243 - 1783903-1784658
Length = 251
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = +3
Query: 357 ACKSVLKPWNHPAVSPLIVFNQKNLQQLLLIRMTKMMMLI 476
+C S++ P P + PL+ +Q +L++LLL + MM+L+
Sbjct: 59 SCPSLVPP---PRLLPLVPLHQSHLRRLLLSLTSSMMVLV 95
>01_06_1261 - 35826513-35828941,35829201-35829294
Length = 840
Score = 28.3 bits (60), Expect = 6.9
Identities = 22/60 (36%), Positives = 33/60 (55%)
Frame = +2
Query: 206 KAYYESLSKMDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRNLVISLQVRVETLE 385
K +ES S+ +V LAG + E+ KVISLE I+ ++N LQ R+++LE
Sbjct: 313 KQKFESSSEASAVH-LAGQVD-EIVDKVISLEIAASSQNAQINRMKNEADELQKRLDSLE 370
>08_01_0449 +
3965959-3966081,3966462-3966714,3967188-3967551,
3967642-3967860,3969106-3969241,3970095-3970346,
3970459-3970752
Length = 546
Score = 27.9 bits (59), Expect = 9.1
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = -2
Query: 168 FSCNKAAMLIIPKFRFELYLNTIKT 94
+ CN++A +++PK+ + YL +KT
Sbjct: 319 YMCNESATVLLPKYMKDFYLYYLKT 343
>08_01_0264 -
2142856-2143152,2143667-2143829,2143915-2143992,
2144097-2144162,2144941-2145098
Length = 253
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +2
Query: 293 SLENENKDLKKAIDDLRNLVISLQVRVETLE 385
SLE++ K+LK D+LR+ L+V ETLE
Sbjct: 146 SLEDKIKELKAEKDELRDEKQKLKVEKETLE 176
>07_03_1501 - 27005542-27005976,27006657-27008660
Length = 812
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +2
Query: 254 AGVPNTELSTKVISLENENKDLKKAIDDLRNLVISLQV 367
AGVP+T+++ +++ + E++ + + +R VI L +
Sbjct: 707 AGVPDTDIAGRLVEILKEHRTPRVKVPRMRRFVIELAI 744
>01_01_0538 -
3938389-3939727,3939828-3940203,3940299-3940516,
3940607-3940769,3940866-3941100,3941186-3941353
Length = 832
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 269 TELSTKVISLENENKDLKKAIDDLRNLVISLQVRVE 376
TEL + L+ +N++ + AI D+ L+I + RVE
Sbjct: 326 TELENEATELKQKNEEERVAIQDMEALLIKRRRRVE 361
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,609,208
Number of Sequences: 37544
Number of extensions: 285423
Number of successful extensions: 649
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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